Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TNFSF9P41273 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TNFSF9P41273 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TNFSF9P41273 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC17.26■□□□□ 0.35
TNFSF9P41273 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TNFSF9P41273 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC17.26■□□□□ 0.35
TNFSF9P41273 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TNFSF9P41273 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.26■□□□□ 0.35
TNFSF9P41273 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TNFSF9P41273 TERF1P3-201ENST00000505638 1227 ntBASIC17.26■□□□□ 0.35
TNFSF9P41273 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.26■□□□□ 0.35
TNFSF9P41273 SRD5A3P1-201ENST00000603021 949 ntBASIC17.26■□□□□ 0.35
TNFSF9P41273 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TNFSF9P41273 TNRC18P3-201ENST00000441896 2691 ntBASIC17.26■□□□□ 0.35
TNFSF9P41273 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TNFSF9P41273 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
TNFSF9P41273 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.26■□□□□ 0.35
TNFSF9P41273 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TNFSF9P41273 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
TNFSF9P41273 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TNFSF9P41273 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
TNFSF9P41273 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TNFSF9P41273 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC17.26■□□□□ 0.35
TNFSF9P41273 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
TNFSF9P41273 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
TNFSF9P41273 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFSF9P41273 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.25■□□□□ 0.35
TNFSF9P41273 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.25■□□□□ 0.35
TNFSF9P41273 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC17.25■□□□□ 0.35
TNFSF9P41273 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC17.25■□□□□ 0.35
TNFSF9P41273 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
TNFSF9P41273 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TNFSF9P41273 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
TNFSF9P41273 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFSF9P41273 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TNFSF9P41273 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.25■□□□□ 0.35
TNFSF9P41273 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFSF9P41273 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
TNFSF9P41273 AC008741.2-201ENST00000612792 3115 ntBASIC17.25■□□□□ 0.35
TNFSF9P41273 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
TNFSF9P41273 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC17.25■□□□□ 0.35
TNFSF9P41273 KRT18P64-201ENST00000434946 1219 ntBASIC17.25■□□□□ 0.35
TNFSF9P41273 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.25■□□□□ 0.35
TNFSF9P41273 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TNFSF9P41273 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.25■□□□□ 0.35
TNFSF9P41273 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
TNFSF9P41273 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.25■□□□□ 0.35
TNFSF9P41273 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.25■□□□□ 0.35
TNFSF9P41273 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC17.25■□□□□ 0.35
TNFSF9P41273 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFSF9P41273 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFSF9P41273 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.25■□□□□ 0.35
TNFSF9P41273 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFSF9P41273 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFSF9P41273 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFSF9P41273 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC17.25■□□□□ 0.35
TNFSF9P41273 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.25■□□□□ 0.35
TNFSF9P41273 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFSF9P41273 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFSF9P41273 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFSF9P41273 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TNFSF9P41273 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFSF9P41273 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFSF9P41273 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TNFSF9P41273 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.24■□□□□ 0.35
TNFSF9P41273 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
TNFSF9P41273 SPDYE19P-201ENST00000338590 713 ntBASIC17.24■□□□□ 0.35
TNFSF9P41273 AC136604.1-201ENST00000418535 575 ntBASIC17.24■□□□□ 0.35
TNFSF9P41273 MIR4313-201ENST00000580760 101 ntBASIC17.24■□□□□ 0.35
TNFSF9P41273 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.24■□□□□ 0.35
TNFSF9P41273 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.24■□□□□ 0.35
TNFSF9P41273 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFSF9P41273 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFSF9P41273 PRAL-201ENST00000624952 3286 ntBASIC17.24■□□□□ 0.35
TNFSF9P41273 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFSF9P41273 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
TNFSF9P41273 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFSF9P41273 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC17.24■□□□□ 0.35
TNFSF9P41273 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TNFSF9P41273 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFSF9P41273 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.24■□□□□ 0.35
TNFSF9P41273 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC17.24■□□□□ 0.35
TNFSF9P41273 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC17.23■□□□□ 0.35
TNFSF9P41273 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC17.23■□□□□ 0.35
TNFSF9P41273 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TNFSF9P41273 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
TNFSF9P41273 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.23■□□□□ 0.35
TNFSF9P41273 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
TNFSF9P41273 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TNFSF9P41273 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TNFSF9P41273 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
TNFSF9P41273 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC17.23■□□□□ 0.35
TNFSF9P41273 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
TNFSF9P41273 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TNFSF9P41273 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TNFSF9P41273 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TNFSF9P41273 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.23■□□□□ 0.35
TNFSF9P41273 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TNFSF9P41273 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TNFSF9P41273 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms