Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
MSX2P35548 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSX2P35548 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
MSX2P35548 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
MSX2P35548 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
MSX2P35548 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
MSX2P35548 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
MSX2P35548 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSX2P35548 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSX2P35548 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
MSX2P35548 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
MSX2P35548 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC15.36■□□□□ 0.05
MSX2P35548 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.36■□□□□ 0.05
MSX2P35548 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSX2P35548 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC15.36■□□□□ 0.05
MSX2P35548 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
MSX2P35548 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.35■□□□□ 0.05
MSX2P35548 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
MSX2P35548 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
MSX2P35548 AC005912.2-201ENST00000619492 2400 ntBASIC15.35■□□□□ 0.05
MSX2P35548 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC15.35■□□□□ 0.05
MSX2P35548 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
MSX2P35548 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.35■□□□□ 0.05
MSX2P35548 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.35■□□□□ 0.05
MSX2P35548 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC15.35■□□□□ 0.05
MSX2P35548 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
MSX2P35548 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
MSX2P35548 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC15.35■□□□□ 0.05
MSX2P35548 HCG4-201ENST00000418983 998 ntBASIC15.35■□□□□ 0.05
MSX2P35548 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC15.35■□□□□ 0.05
MSX2P35548 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.35■□□□□ 0.05
MSX2P35548 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC15.35■□□□□ 0.05
MSX2P35548 AC106795.1-205ENST00000512851 1056 ntBASIC15.35■□□□□ 0.05
MSX2P35548 FICD-205ENST00000552758 603 ntTSL 2 BASIC15.35■□□□□ 0.05
MSX2P35548 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.35■□□□□ 0.05
MSX2P35548 AC005412.3-201ENST00000580309 715 ntBASIC15.35■□□□□ 0.05
MSX2P35548 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 AC069148.1-201ENST00000608741 768 ntBASIC15.35■□□□□ 0.05
MSX2P35548 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
MSX2P35548 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.35■□□□□ 0.05
MSX2P35548 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
MSX2P35548 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
MSX2P35548 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.35■□□□□ 0.05
MSX2P35548 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
MSX2P35548 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.35■□□□□ 0.05
MSX2P35548 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
MSX2P35548 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC15.35■□□□□ 0.05
MSX2P35548 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
MSX2P35548 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
MSX2P35548 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSX2P35548 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
MSX2P35548 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.34■□□□□ 0.05
MSX2P35548 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC15.34■□□□□ 0.05
MSX2P35548 AC232323.1-201ENST00000540724 2099 ntBASIC15.34■□□□□ 0.05
MSX2P35548 REXO1L5P-201ENST00000622260 2098 ntBASIC15.34■□□□□ 0.05
MSX2P35548 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
MSX2P35548 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
MSX2P35548 OR2I1P-210ENST00000642037 4691 ntBASIC15.34■□□□□ 0.05
MSX2P35548 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.34■□□□□ 0.05
MSX2P35548 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC15.34■□□□□ 0.05
MSX2P35548 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.34■□□□□ 0.05
MSX2P35548 ELK2BP-201ENST00000415014 1224 ntBASIC15.34■□□□□ 0.05
MSX2P35548 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC15.34■□□□□ 0.05
MSX2P35548 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.34■□□□□ 0.05
MSX2P35548 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.34■□□□□ 0.05
MSX2P35548 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
MSX2P35548 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.34■□□□□ 0.05
MSX2P35548 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC15.34■□□□□ 0.05
MSX2P35548 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC15.34■□□□□ 0.05
MSX2P35548 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC15.34■□□□□ 0.05
MSX2P35548 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC15.34■□□□□ 0.05
MSX2P35548 AL139288.1-201ENST00000623748 933 ntBASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms