Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
USF1P22415 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
USF1P22415 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC13.62□□□□□ -0.23
USF1P22415 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
USF1P22415 AL391825.1-201ENST00000457671 1364 ntBASIC13.62□□□□□ -0.23
USF1P22415 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC13.62□□□□□ -0.23
USF1P22415 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
USF1P22415 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
USF1P22415 AL391256.1-201ENST00000443260 1855 ntBASIC13.62□□□□□ -0.23
USF1P22415 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
USF1P22415 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
USF1P22415 VMO1-203ENST00000416307 712 ntTSL 2 BASIC13.62□□□□□ -0.23
USF1P22415 AL080243.2-201ENST00000418783 582 ntBASIC13.62□□□□□ -0.23
USF1P22415 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
USF1P22415 DFFBP1-201ENST00000433250 979 ntBASIC13.62□□□□□ -0.23
USF1P22415 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
USF1P22415 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC13.62□□□□□ -0.23
USF1P22415 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC13.62□□□□□ -0.23
USF1P22415 BANF1P1-201ENST00000553684 263 ntBASIC13.62□□□□□ -0.23
USF1P22415 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC13.62□□□□□ -0.23
USF1P22415 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
USF1P22415 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC13.62□□□□□ -0.23
USF1P22415 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
USF1P22415 AC026979.3-201ENST00000607315 403 ntBASIC13.62□□□□□ -0.23
USF1P22415 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC13.62□□□□□ -0.23
USF1P22415 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC13.62□□□□□ -0.23
USF1P22415 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
USF1P22415 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC13.62□□□□□ -0.23
USF1P22415 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
USF1P22415 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC13.62□□□□□ -0.23
USF1P22415 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
USF1P22415 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC13.62□□□□□ -0.23
USF1P22415 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
USF1P22415 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
USF1P22415 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
USF1P22415 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
USF1P22415 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
USF1P22415 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC13.62□□□□□ -0.23
USF1P22415 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
USF1P22415 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
USF1P22415 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC13.62□□□□□ -0.23
USF1P22415 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC13.62□□□□□ -0.23
USF1P22415 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
USF1P22415 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 AC138969.3-201ENST00000546612 1459 ntBASIC13.61□□□□□ -0.23
USF1P22415 AC138932.2-201ENST00000548268 1459 ntBASIC13.61□□□□□ -0.23
USF1P22415 AC126755.4-201ENST00000549796 1459 ntBASIC13.61□□□□□ -0.23
USF1P22415 AL645728.1-201ENST00000366221 2101 ntBASIC13.61□□□□□ -0.23
USF1P22415 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
USF1P22415 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC13.61□□□□□ -0.23
USF1P22415 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 RBM39-205ENST00000397370 612 ntTSL 2 BASIC13.61□□□□□ -0.23
USF1P22415 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC13.61□□□□□ -0.23
USF1P22415 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC13.61□□□□□ -0.23
USF1P22415 HLA-J-202ENST00000469281 1241 ntBASIC13.61□□□□□ -0.23
USF1P22415 ZNF890P-202ENST00000530367 1156 ntBASIC13.61□□□□□ -0.23
USF1P22415 API5-211ENST00000534695 560 ntTSL 5 BASIC13.61□□□□□ -0.23
USF1P22415 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
USF1P22415 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC13.61□□□□□ -0.23
USF1P22415 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC13.61□□□□□ -0.23
USF1P22415 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC13.61□□□□□ -0.23
USF1P22415 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 AC020765.3-201ENST00000613051 740 ntBASIC13.61□□□□□ -0.23
USF1P22415 AC004840.1-201ENST00000636359 365 ntBASIC13.61□□□□□ -0.23
USF1P22415 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
USF1P22415 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC13.61□□□□□ -0.23
USF1P22415 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC13.61□□□□□ -0.23
USF1P22415 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
USF1P22415 HLA-A-202ENST00000376806 1854 ntBASIC13.61□□□□□ -0.23
USF1P22415 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC13.61□□□□□ -0.23
USF1P22415 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 MST1L-201ENST00000442552 2185 ntBASIC13.61□□□□□ -0.23
USF1P22415 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
USF1P22415 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
USF1P22415 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
USF1P22415 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
USF1P22415 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
USF1P22415 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC13.6□□□□□ -0.23
USF1P22415 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
USF1P22415 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
USF1P22415 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
USF1P22415 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
USF1P22415 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms