Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.25■□□□□ 0.19
COL6A3P12111 AC133963.1-201ENST00000504166 1679 ntBASIC16.25■□□□□ 0.19
COL6A3P12111 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A3P12111 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
COL6A3P12111 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A3P12111 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.24■□□□□ 0.19
COL6A3P12111 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
COL6A3P12111 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
COL6A3P12111 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A3P12111 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A3P12111 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
COL6A3P12111 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC16.24■□□□□ 0.19
COL6A3P12111 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC16.24■□□□□ 0.19
COL6A3P12111 SLED1-202ENST00000512051 380 ntBASIC16.24■□□□□ 0.19
COL6A3P12111 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
COL6A3P12111 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC16.24■□□□□ 0.19
COL6A3P12111 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A3P12111 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.24■□□□□ 0.19
COL6A3P12111 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.24■□□□□ 0.19
COL6A3P12111 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
COL6A3P12111 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
COL6A3P12111 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A3P12111 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A3P12111 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
COL6A3P12111 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
COL6A3P12111 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC16.24■□□□□ 0.19
COL6A3P12111 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
COL6A3P12111 RN7SL258P-201ENST00000478664 300 ntBASIC16.24■□□□□ 0.19
COL6A3P12111 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A3P12111 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A3P12111 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A3P12111 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A3P12111 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A3P12111 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A3P12111 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
COL6A3P12111 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
COL6A3P12111 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A3P12111 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.24■□□□□ 0.19
COL6A3P12111 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC16.24■□□□□ 0.19
COL6A3P12111 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC16.24■□□□□ 0.19
COL6A3P12111 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A3P12111 PEBP1P2-201ENST00000603980 558 ntBASIC16.24■□□□□ 0.19
COL6A3P12111 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL6A3P12111 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.23■□□□□ 0.19
COL6A3P12111 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A3P12111 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A3P12111 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC16.23■□□□□ 0.19
COL6A3P12111 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
COL6A3P12111 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A3P12111 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC16.23■□□□□ 0.19
COL6A3P12111 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.23■□□□□ 0.19
COL6A3P12111 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.23■□□□□ 0.19
COL6A3P12111 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.23■□□□□ 0.19
COL6A3P12111 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A3P12111 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC16.23■□□□□ 0.19
COL6A3P12111 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A3P12111 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC16.23■□□□□ 0.19
COL6A3P12111 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC16.23■□□□□ 0.19
COL6A3P12111 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC16.23■□□□□ 0.19
COL6A3P12111 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC16.23■□□□□ 0.19
COL6A3P12111 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC16.23■□□□□ 0.19
COL6A3P12111 AC090502.4-201ENST00000551714 1386 ntBASIC16.23■□□□□ 0.19
COL6A3P12111 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A3P12111 AC116353.5-201ENST00000638148 1699 ntBASIC16.23■□□□□ 0.19
COL6A3P12111 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.23■□□□□ 0.19
COL6A3P12111 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A3P12111 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC16.23■□□□□ 0.19
COL6A3P12111 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.23■□□□□ 0.19
COL6A3P12111 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A3P12111 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A3P12111 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A3P12111 MIR566-201ENST00000385187 94 ntBASIC16.23■□□□□ 0.19
COL6A3P12111 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC16.23■□□□□ 0.19
COL6A3P12111 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A3P12111 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A3P12111 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.23■□□□□ 0.19
COL6A3P12111 AP000974.1-201ENST00000623909 2387 ntBASIC16.23■□□□□ 0.19
COL6A3P12111 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.23■□□□□ 0.19
COL6A3P12111 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A3P12111 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL6A3P12111 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.23■□□□□ 0.19
COL6A3P12111 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A3P12111 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
COL6A3P12111 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A3P12111 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A3P12111 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A3P12111 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC16.22■□□□□ 0.19
COL6A3P12111 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC16.22■□□□□ 0.19
COL6A3P12111 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A3P12111 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.22■□□□□ 0.19
COL6A3P12111 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A3P12111 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A3P12111 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.22■□□□□ 0.19
COL6A3P12111 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A3P12111 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
COL6A3P12111 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
COL6A3P12111 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC16.22■□□□□ 0.19
COL6A3P12111 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC16.22■□□□□ 0.19
COL6A3P12111 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A3P12111 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms