Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
APOEP02649 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
APOEP02649 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
APOEP02649 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
APOEP02649 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
APOEP02649 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.82■□□□□ 0.28
APOEP02649 AC024909.3-201ENST00000611513 2257 ntBASIC16.82■□□□□ 0.28
APOEP02649 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
APOEP02649 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.82■□□□□ 0.28
APOEP02649 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.82■□□□□ 0.28
APOEP02649 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.82■□□□□ 0.28
APOEP02649 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.82■□□□□ 0.28
APOEP02649 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.82■□□□□ 0.28
APOEP02649 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 MTND6P24-201ENST00000440466 518 ntBASIC16.82■□□□□ 0.28
APOEP02649 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 AC069120.2-201ENST00000524091 540 ntBASIC16.82■□□□□ 0.28
APOEP02649 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.82■□□□□ 0.28
APOEP02649 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.82■□□□□ 0.28
APOEP02649 AC105021.1-202ENST00000570572 669 ntBASIC16.82■□□□□ 0.28
APOEP02649 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.82■□□□□ 0.28
APOEP02649 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.82■□□□□ 0.28
APOEP02649 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.82■□□□□ 0.28
APOEP02649 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.82■□□□□ 0.28
APOEP02649 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.82■□□□□ 0.28
APOEP02649 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 AL603832.2-201ENST00000566195 2125 ntBASIC16.82■□□□□ 0.28
APOEP02649 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.82■□□□□ 0.28
APOEP02649 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
APOEP02649 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
APOEP02649 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
APOEP02649 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.81■□□□□ 0.28
APOEP02649 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
APOEP02649 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
APOEP02649 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
APOEP02649 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
APOEP02649 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
APOEP02649 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
APOEP02649 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
APOEP02649 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
APOEP02649 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.81■□□□□ 0.28
APOEP02649 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.81■□□□□ 0.28
APOEP02649 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
APOEP02649 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
APOEP02649 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.81■□□□□ 0.28
APOEP02649 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.81■□□□□ 0.28
APOEP02649 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
APOEP02649 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC16.81■□□□□ 0.28
APOEP02649 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
APOEP02649 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
APOEP02649 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
APOEP02649 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
APOEP02649 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
APOEP02649 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.81■□□□□ 0.28
APOEP02649 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
APOEP02649 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
APOEP02649 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
APOEP02649 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
APOEP02649 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
APOEP02649 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.81■□□□□ 0.28
APOEP02649 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
APOEP02649 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
APOEP02649 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
APOEP02649 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
APOEP02649 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
APOEP02649 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
APOEP02649 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
APOEP02649 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
APOEP02649 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
APOEP02649 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.8■□□□□ 0.28
APOEP02649 AL596257.1-201ENST00000641463 2694 ntBASIC16.8■□□□□ 0.28
APOEP02649 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.8■□□□□ 0.28
APOEP02649 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
APOEP02649 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
APOEP02649 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
APOEP02649 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
APOEP02649 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
APOEP02649 MIR943-201ENST00000401286 94 ntBASIC16.8■□□□□ 0.28
APOEP02649 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.8■□□□□ 0.28
APOEP02649 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms