Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMX1BO60663 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMX1BO60663 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.13□□□□□ -0.15
LMX1BO60663 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.13□□□□□ -0.15
LMX1BO60663 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMX1BO60663 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMX1BO60663 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
LMX1BO60663 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMX1BO60663 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LMX1BO60663 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC14.13□□□□□ -0.15
LMX1BO60663 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC14.13□□□□□ -0.15
LMX1BO60663 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMX1BO60663 PMS2P4-201ENST00000412466 1052 ntBASIC14.13□□□□□ -0.15
LMX1BO60663 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LMX1BO60663 AC093724.1-201ENST00000448659 1027 ntBASIC14.13□□□□□ -0.15
LMX1BO60663 TIMM8BP1-201ENST00000452384 211 ntBASIC14.13□□□□□ -0.15
LMX1BO60663 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.13□□□□□ -0.15
LMX1BO60663 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
LMX1BO60663 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC14.13□□□□□ -0.15
LMX1BO60663 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.13□□□□□ -0.15
LMX1BO60663 RPL28-209ENST00000560055 670 ntTSL 3 BASIC14.13□□□□□ -0.15
LMX1BO60663 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.13□□□□□ -0.15
LMX1BO60663 AC138761.1-201ENST00000584393 385 ntBASIC14.13□□□□□ -0.15
LMX1BO60663 AC005498.2-205ENST00000593218 784 ntBASIC14.13□□□□□ -0.15
LMX1BO60663 AL645728.2-201ENST00000641974 660 ntBASIC14.13□□□□□ -0.15
LMX1BO60663 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.13□□□□□ -0.15
LMX1BO60663 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.13□□□□□ -0.15
LMX1BO60663 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMX1BO60663 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMX1BO60663 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
LMX1BO60663 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMX1BO60663 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.13□□□□□ -0.15
LMX1BO60663 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC14.13□□□□□ -0.15
LMX1BO60663 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LMX1BO60663 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMX1BO60663 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC14.13□□□□□ -0.15
LMX1BO60663 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.13□□□□□ -0.15
LMX1BO60663 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMX1BO60663 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC14.13□□□□□ -0.15
LMX1BO60663 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC14.12□□□□□ -0.15
LMX1BO60663 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC14.12□□□□□ -0.15
LMX1BO60663 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.12□□□□□ -0.15
LMX1BO60663 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
LMX1BO60663 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.12□□□□□ -0.15
LMX1BO60663 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.12□□□□□ -0.15
LMX1BO60663 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
LMX1BO60663 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC14.12□□□□□ -0.15
LMX1BO60663 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
LMX1BO60663 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC14.12□□□□□ -0.15
LMX1BO60663 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC14.12□□□□□ -0.15
LMX1BO60663 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC14.12□□□□□ -0.15
LMX1BO60663 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC14.12□□□□□ -0.15
LMX1BO60663 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 AC069262.1-201ENST00000539058 672 ntBASIC14.12□□□□□ -0.15
LMX1BO60663 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC14.12□□□□□ -0.15
LMX1BO60663 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.12□□□□□ -0.15
LMX1BO60663 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.12□□□□□ -0.15
LMX1BO60663 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 CICP13-201ENST00000422015 2789 ntBASIC14.12□□□□□ -0.15
LMX1BO60663 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.12□□□□□ -0.15
LMX1BO60663 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
LMX1BO60663 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
LMX1BO60663 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LMX1BO60663 AC136621.1-201ENST00000624017 2304 ntBASIC14.12□□□□□ -0.15
LMX1BO60663 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.12□□□□□ -0.15
LMX1BO60663 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
LMX1BO60663 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.11□□□□□ -0.15
LMX1BO60663 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LMX1BO60663 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
LMX1BO60663 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.11□□□□□ -0.15
LMX1BO60663 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms