Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 AD000864.1-201ENST00000624076 2295 ntBASIC16.4■□□□□ 0.22
TDP1Q9NUW8 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 ORC6-206ENST00000568364 888 ntTSL 5 BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 BTNL10-201ENST00000595971 695 ntBASIC16.4■□□□□ 0.22
TDP1Q9NUW8 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 CU634019.7-201ENST00000624153 1185 ntBASIC16.4■□□□□ 0.22
TDP1Q9NUW8 FP236241.2-201ENST00000624906 1185 ntBASIC16.4■□□□□ 0.22
TDP1Q9NUW8 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.4■□□□□ 0.22
TDP1Q9NUW8 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.22
TDP1Q9NUW8 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.39■□□□□ 0.22
TDP1Q9NUW8 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 HLA-V-201ENST00000429037 534 ntBASIC16.39■□□□□ 0.21
TDP1Q9NUW8 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 HNRNPUP1-201ENST00000554987 333 ntBASIC16.39■□□□□ 0.21
TDP1Q9NUW8 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 Six3os1_5.1-201ENST00000611000 271 ntBASIC16.39■□□□□ 0.21
TDP1Q9NUW8 RPSAP52-203ENST00000622976 1023 ntBASIC16.39■□□□□ 0.21
TDP1Q9NUW8 SERF2-217ENST00000630046 862 ntTSL 5 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TDP1Q9NUW8 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.38■□□□□ 0.21
TDP1Q9NUW8 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TDP1Q9NUW8 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TDP1Q9NUW8 PRORSD1P-202ENST00000563365 2154 ntBASIC16.38■□□□□ 0.21
TDP1Q9NUW8 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TDP1Q9NUW8 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TDP1Q9NUW8 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.38■□□□□ 0.21
TDP1Q9NUW8 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
TDP1Q9NUW8 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.38■□□□□ 0.21
TDP1Q9NUW8 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TDP1Q9NUW8 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TDP1Q9NUW8 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms