Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC14.08□□□□□ -0.16
NKX3-1Q99801 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX3-1Q99801 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX3-1Q99801 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC14.08□□□□□ -0.16
NKX3-1Q99801 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 RPS2P28-201ENST00000314255 741 ntBASIC14.07□□□□□ -0.16
NKX3-1Q99801 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 MIR648-201ENST00000385046 94 ntBASIC14.07□□□□□ -0.16
NKX3-1Q99801 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 AC008735.5-201ENST00000623544 497 ntBASIC14.07□□□□□ -0.16
NKX3-1Q99801 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.07□□□□□ -0.16
NKX3-1Q99801 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX3-1Q99801 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 AC092127.1-201ENST00000567093 3455 ntBASIC14.06□□□□□ -0.16
NKX3-1Q99801 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 AC092919.2-201ENST00000623631 1645 ntBASIC14.06□□□□□ -0.16
NKX3-1Q99801 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC14.06□□□□□ -0.16
NKX3-1Q99801 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 HMGA1P7-201ENST00000406908 502 ntBASIC14.06□□□□□ -0.16
NKX3-1Q99801 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 AP000347.1-202ENST00000435868 847 ntBASIC14.06□□□□□ -0.16
NKX3-1Q99801 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 MIR1199-201ENST00000621445 119 ntBASIC14.06□□□□□ -0.16
NKX3-1Q99801 AC117500.6-201ENST00000624871 588 ntBASIC14.06□□□□□ -0.16
NKX3-1Q99801 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 AC091951.1-201ENST00000512854 2465 ntBASIC14.06□□□□□ -0.16
NKX3-1Q99801 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms