Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HPS3Q969F9 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HPS3Q969F9 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC17.76■□□□□ 0.43
HPS3Q969F9 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
HPS3Q969F9 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HPS3Q969F9 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HPS3Q969F9 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HPS3Q969F9 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HPS3Q969F9 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
HPS3Q969F9 AC109322.1-201ENST00000524499 1264 ntBASIC17.76■□□□□ 0.43
HPS3Q969F9 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HPS3Q969F9 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.76■□□□□ 0.43
HPS3Q969F9 SNHG9-202ENST00000564014 471 ntBASIC17.76■□□□□ 0.43
HPS3Q969F9 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.76■□□□□ 0.43
HPS3Q969F9 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HPS3Q969F9 MIR4453-201ENST00000584019 89 ntBASIC17.76■□□□□ 0.43
HPS3Q969F9 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.76■□□□□ 0.43
HPS3Q969F9 AC003101.2-201ENST00000612557 442 ntBASIC17.76■□□□□ 0.43
HPS3Q969F9 AC018529.1-201ENST00000613063 361 ntBASIC17.76■□□□□ 0.43
HPS3Q969F9 AL691403.2-201ENST00000618460 490 ntBASIC17.76■□□□□ 0.43
HPS3Q969F9 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HPS3Q969F9 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
HPS3Q969F9 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
HPS3Q969F9 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
HPS3Q969F9 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HPS3Q969F9 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HPS3Q969F9 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HPS3Q969F9 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HPS3Q969F9 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.76■□□□□ 0.43
HPS3Q969F9 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.76■□□□□ 0.43
HPS3Q969F9 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.76■□□□□ 0.43
HPS3Q969F9 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HPS3Q969F9 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HPS3Q969F9 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC17.75■□□□□ 0.43
HPS3Q969F9 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
HPS3Q969F9 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 DBET-201ENST00000630918 3363 ntBASIC17.75■□□□□ 0.43
HPS3Q969F9 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
HPS3Q969F9 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
HPS3Q969F9 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
HPS3Q969F9 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
HPS3Q969F9 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC17.75■□□□□ 0.43
HPS3Q969F9 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC17.75■□□□□ 0.43
HPS3Q969F9 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.75■□□□□ 0.43
HPS3Q969F9 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.75■□□□□ 0.43
HPS3Q969F9 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
HPS3Q969F9 AC243562.2-201ENST00000561247 970 ntBASIC17.75■□□□□ 0.43
HPS3Q969F9 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.75■□□□□ 0.43
HPS3Q969F9 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC17.75■□□□□ 0.43
HPS3Q969F9 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
HPS3Q969F9 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
HPS3Q969F9 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC17.75■□□□□ 0.43
HPS3Q969F9 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.75■□□□□ 0.43
HPS3Q969F9 AC092384.3-202ENST00000564646 2873 ntBASIC17.75■□□□□ 0.43
HPS3Q969F9 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC17.75■□□□□ 0.43
HPS3Q969F9 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.75■□□□□ 0.43
HPS3Q969F9 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HPS3Q969F9 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
HPS3Q969F9 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HPS3Q969F9 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
HPS3Q969F9 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HPS3Q969F9 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
HPS3Q969F9 AC013268.4-201ENST00000637413 2228 ntBASIC17.74■□□□□ 0.43
HPS3Q969F9 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HPS3Q969F9 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HPS3Q969F9 AC136621.1-201ENST00000624017 2304 ntBASIC17.74■□□□□ 0.43
HPS3Q969F9 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC17.74■□□□□ 0.43
HPS3Q969F9 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.74■□□□□ 0.43
HPS3Q969F9 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.74■□□□□ 0.43
HPS3Q969F9 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.74■□□□□ 0.43
HPS3Q969F9 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.74■□□□□ 0.43
HPS3Q969F9 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.74■□□□□ 0.43
HPS3Q969F9 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
HPS3Q969F9 AC105021.1-202ENST00000570572 669 ntBASIC17.74■□□□□ 0.43
HPS3Q969F9 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HPS3Q969F9 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HPS3Q969F9 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HPS3Q969F9 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.74■□□□□ 0.43
HPS3Q969F9 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms