Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 EHF-205ENST00000527935 557 ntTSL 2 BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 HNRNPUP1-201ENST00000554987 333 ntBASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 MIR4313-201ENST00000580760 101 ntBASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 AL033527.5-202ENST00000641632 1098 ntBASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 BTBD7P1-201ENST00000447253 1453 ntBASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 RPF1-202ENST00000370656 724 ntTSL 2 BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 KRT18P64-201ENST00000434946 1219 ntBASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 PACS1-203ENST00000524815 628 ntTSL 4 BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 AP005482.1-201ENST00000563722 1273 ntBASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 AC025048.3-201ENST00000590609 569 ntBASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 AC099568.2-201ENST00000609194 695 ntBASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 AC005702.4-201ENST00000618393 416 ntBASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 AC009090.5-201ENST00000624886 2285 ntBASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 ACE-203ENST00000413513 2237 ntTSL 2 BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NKX2-3Q8TAU0 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 AP001282.1-201ENST00000531301 1499 ntBASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 AC093004.1-201ENST00000508850 424 ntBASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 AC243562.2-201ENST00000561247 970 ntBASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 TEX48-202ENST00000612244 662 ntTSL 3 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 AL033527.4-201ENST00000641026 673 ntBASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 VILL-207ENST00000465644 1857 ntTSL 5 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
NKX2-3Q8TAU0 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms