Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 AL596442.2-201ENST00000610240 980 ntBASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 AC003101.2-201ENST00000612557 442 ntBASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 AC023511.2-201ENST00000618803 211 ntBASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 CYP4F24P-201ENST00000586049 1580 ntBASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC65Q8IXS2 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 AC132872.4-202ENST00000622924 2756 ntBASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 HLA-DQB2-231ENST00000435145 2026 ntBASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC65Q8IXS2 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 DNAJB3-202ENST00000449667 1266 ntBASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 AC105021.1-202ENST00000570572 669 ntBASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 AP001059.3-201ENST00000619053 235 ntBASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 AC079781.4-201ENST00000641908 219 ntBASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 AC105917.1-201ENST00000506637 2539 ntBASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC65Q8IXS2 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 AC027612.4-201ENST00000605371 583 ntBASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 REXO1L1P-202ENST00000608646 1974 ntBASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 KRT8P37-201ENST00000451609 1420 ntBASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms