Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CDX1P47902 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CDX1P47902 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC13.19□□□□□ -0.3
CDX1P47902 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
CDX1P47902 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CDX1P47902 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CDX1P47902 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CDX1P47902 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CDX1P47902 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC13.18□□□□□ -0.3
CDX1P47902 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.18□□□□□ -0.3
CDX1P47902 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC13.18□□□□□ -0.3
CDX1P47902 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
CDX1P47902 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CDX1P47902 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.18□□□□□ -0.3
CDX1P47902 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
CDX1P47902 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC13.18□□□□□ -0.3
CDX1P47902 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC13.18□□□□□ -0.3
CDX1P47902 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.18□□□□□ -0.3
CDX1P47902 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC13.18□□□□□ -0.3
CDX1P47902 MKNK2P1-201ENST00000437526 628 ntBASIC13.18□□□□□ -0.3
CDX1P47902 FIS1-203ENST00000442303 631 ntTSL 3 BASIC13.18□□□□□ -0.3
CDX1P47902 AL513480.1-201ENST00000451731 511 ntBASIC13.18□□□□□ -0.3
CDX1P47902 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
CDX1P47902 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC13.18□□□□□ -0.3
CDX1P47902 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC13.18□□□□□ -0.3
CDX1P47902 AC005829.1-201ENST00000570002 483 ntBASIC13.18□□□□□ -0.3
CDX1P47902 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC13.18□□□□□ -0.3
CDX1P47902 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC13.18□□□□□ -0.3
CDX1P47902 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC13.18□□□□□ -0.3
CDX1P47902 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC13.18□□□□□ -0.3
CDX1P47902 AC079781.4-201ENST00000641908 219 ntBASIC13.18□□□□□ -0.3
CDX1P47902 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
CDX1P47902 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 AC025580.3-201ENST00000617932 1424 ntBASIC13.18□□□□□ -0.3
CDX1P47902 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
CDX1P47902 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CDX1P47902 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.18□□□□□ -0.3
CDX1P47902 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC13.18□□□□□ -0.3
CDX1P47902 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CDX1P47902 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC13.18□□□□□ -0.3
CDX1P47902 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CDX1P47902 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CDX1P47902 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC13.18□□□□□ -0.3
CDX1P47902 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 PGR-210ENST00000619228 3038 ntTSL 5 BASIC13.18□□□□□ -0.3
CDX1P47902 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.18□□□□□ -0.3
CDX1P47902 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CDX1P47902 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
CDX1P47902 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.17□□□□□ -0.3
CDX1P47902 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
CDX1P47902 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
CDX1P47902 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC13.17□□□□□ -0.3
CDX1P47902 REM2-202ENST00000536884 1331 ntTSL 2 BASIC13.17□□□□□ -0.3
CDX1P47902 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC13.17□□□□□ -0.3
CDX1P47902 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC13.17□□□□□ -0.3
CDX1P47902 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms