Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 FGFR3P1-201ENST00000449999 601 ntBASIC18.51■□□□□ 0.55
SCN4AP35499 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SCN4AP35499 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC18.51■□□□□ 0.55
SCN4AP35499 AL805961.1-203ENST00000641078 1258 ntBASIC18.51■□□□□ 0.55
SCN4AP35499 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC18.51■□□□□ 0.55
SCN4AP35499 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.51■□□□□ 0.55
SCN4AP35499 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SCN4AP35499 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SCN4AP35499 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC18.51■□□□□ 0.55
SCN4AP35499 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SCN4AP35499 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC18.5■□□□□ 0.55
SCN4AP35499 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
SCN4AP35499 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SCN4AP35499 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SCN4AP35499 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SCN4AP35499 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SCN4AP35499 AC005332.8-201ENST00000622750 2735 ntBASIC18.5■□□□□ 0.55
SCN4AP35499 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SCN4AP35499 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SCN4AP35499 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SCN4AP35499 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC18.5■□□□□ 0.55
SCN4AP35499 AL136309.1-201ENST00000403917 691 ntBASIC18.5■□□□□ 0.55
SCN4AP35499 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC18.5■□□□□ 0.55
SCN4AP35499 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SCN4AP35499 AC019193.1-201ENST00000506678 823 ntBASIC18.5■□□□□ 0.55
SCN4AP35499 AC135983.4-201ENST00000564116 1262 ntBASIC18.5■□□□□ 0.55
SCN4AP35499 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SCN4AP35499 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.5■□□□□ 0.55
SCN4AP35499 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SCN4AP35499 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.5■□□□□ 0.55
SCN4AP35499 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
SCN4AP35499 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.5■□□□□ 0.55
SCN4AP35499 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
SCN4AP35499 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SCN4AP35499 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
SCN4AP35499 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.49■□□□□ 0.55
SCN4AP35499 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.49■□□□□ 0.55
SCN4AP35499 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SCN4AP35499 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SCN4AP35499 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC18.49■□□□□ 0.55
SCN4AP35499 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
SCN4AP35499 AC026316.1-201ENST00000398900 414 ntBASIC18.49■□□□□ 0.55
SCN4AP35499 RPL13AP19-201ENST00000434320 584 ntBASIC18.49■□□□□ 0.55
SCN4AP35499 RN7SL818P-201ENST00000485099 259 ntBASIC18.49■□□□□ 0.55
SCN4AP35499 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC18.49■□□□□ 0.55
SCN4AP35499 PGAM1P5-201ENST00000548011 764 ntBASIC18.49■□□□□ 0.55
SCN4AP35499 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
SCN4AP35499 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC18.49■□□□□ 0.55
SCN4AP35499 RN7SL725P-201ENST00000606439 259 ntBASIC18.49■□□□□ 0.55
SCN4AP35499 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC18.49■□□□□ 0.55
SCN4AP35499 PRSS30P-206ENST00000641773 873 ntBASIC18.49■□□□□ 0.55
SCN4AP35499 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SCN4AP35499 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SCN4AP35499 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SCN4AP35499 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SCN4AP35499 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SCN4AP35499 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SCN4AP35499 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SCN4AP35499 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC18.49■□□□□ 0.55
SCN4AP35499 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SCN4AP35499 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SCN4AP35499 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SCN4AP35499 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
SCN4AP35499 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
SCN4AP35499 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SCN4AP35499 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SCN4AP35499 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SCN4AP35499 AC125604.1-201ENST00000496255 707 ntBASIC18.49■□□□□ 0.55
SCN4AP35499 AC132192.2-201ENST00000596206 1147 ntBASIC18.49■□□□□ 0.55
SCN4AP35499 BNIP3P13-201ENST00000599968 566 ntBASIC18.49■□□□□ 0.55
SCN4AP35499 AC073352.2-201ENST00000609385 439 ntBASIC18.49■□□□□ 0.55
SCN4AP35499 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC18.49■□□□□ 0.55
SCN4AP35499 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC18.49■□□□□ 0.55
SCN4AP35499 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SCN4AP35499 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC18.49■□□□□ 0.55
SCN4AP35499 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SCN4AP35499 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SCN4AP35499 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
SCN4AP35499 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SCN4AP35499 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SCN4AP35499 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SCN4AP35499 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SCN4AP35499 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SCN4AP35499 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC18.48■□□□□ 0.55
SCN4AP35499 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SCN4AP35499 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SCN4AP35499 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SCN4AP35499 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SCN4AP35499 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SCN4AP35499 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SCN4AP35499 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC18.48■□□□□ 0.55
SCN4AP35499 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC18.48■□□□□ 0.55
SCN4AP35499 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
SCN4AP35499 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC18.48■□□□□ 0.55
SCN4AP35499 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC18.48■□□□□ 0.55
SCN4AP35499 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC18.48■□□□□ 0.55
SCN4AP35499 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SCN4AP35499 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SCN4AP35499 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
SCN4AP35499 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms