Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CIITAP33076 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC17.97■□□□□ 0.47
CIITAP33076 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CIITAP33076 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CIITAP33076 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CIITAP33076 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CIITAP33076 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.97■□□□□ 0.47
CIITAP33076 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CIITAP33076 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CIITAP33076 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.97■□□□□ 0.47
CIITAP33076 FTH1-202ENST00000526640 786 ntTSL 2 BASIC17.97■□□□□ 0.47
CIITAP33076 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC17.97■□□□□ 0.47
CIITAP33076 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.97■□□□□ 0.47
CIITAP33076 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
CIITAP33076 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CIITAP33076 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CIITAP33076 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.97■□□□□ 0.47
CIITAP33076 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CIITAP33076 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CIITAP33076 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CIITAP33076 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC17.97■□□□□ 0.47
CIITAP33076 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.97■□□□□ 0.47
CIITAP33076 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.97■□□□□ 0.47
CIITAP33076 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CIITAP33076 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC17.97■□□□□ 0.47
CIITAP33076 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
CIITAP33076 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CIITAP33076 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CIITAP33076 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CIITAP33076 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC17.96■□□□□ 0.47
CIITAP33076 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.96■□□□□ 0.47
CIITAP33076 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
CIITAP33076 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
CIITAP33076 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
CIITAP33076 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.96■□□□□ 0.47
CIITAP33076 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CIITAP33076 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC17.96■□□□□ 0.47
CIITAP33076 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CIITAP33076 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CIITAP33076 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
CIITAP33076 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CIITAP33076 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CIITAP33076 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17.96■□□□□ 0.47
CIITAP33076 AL365203.3-201ENST00000609742 2057 ntBASIC17.96■□□□□ 0.47
CIITAP33076 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.96■□□□□ 0.47
CIITAP33076 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CIITAP33076 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CIITAP33076 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC17.96■□□□□ 0.47
CIITAP33076 CALY-202ENST00000368555 783 ntTSL 2 BASIC17.96■□□□□ 0.47
CIITAP33076 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CIITAP33076 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CIITAP33076 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC17.96■□□□□ 0.47
CIITAP33076 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC17.96■□□□□ 0.47
CIITAP33076 AL589987.1-201ENST00000453380 819 ntBASIC17.96■□□□□ 0.47
CIITAP33076 RHOA-206ENST00000454011 889 ntTSL 2 BASIC17.96■□□□□ 0.47
CIITAP33076 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC17.96■□□□□ 0.47
CIITAP33076 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.96■□□□□ 0.47
CIITAP33076 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CIITAP33076 AC138761.1-201ENST00000584393 385 ntBASIC17.96■□□□□ 0.47
CIITAP33076 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC17.96■□□□□ 0.47
CIITAP33076 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
CIITAP33076 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CIITAP33076 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CIITAP33076 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CIITAP33076 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CIITAP33076 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC17.96■□□□□ 0.47
CIITAP33076 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CIITAP33076 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC17.96■□□□□ 0.47
CIITAP33076 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
CIITAP33076 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
CIITAP33076 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CIITAP33076 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.95■□□□□ 0.46
CIITAP33076 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CIITAP33076 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CIITAP33076 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CIITAP33076 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CIITAP33076 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CIITAP33076 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC17.95■□□□□ 0.46
CIITAP33076 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CIITAP33076 CALY-203ENST00000368558 825 ntTSL 5 BASIC17.95■□□□□ 0.46
CIITAP33076 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CIITAP33076 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC17.95■□□□□ 0.46
CIITAP33076 TOMM22P5-201ENST00000416399 439 ntBASIC17.95■□□□□ 0.46
CIITAP33076 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC17.95■□□□□ 0.46
CIITAP33076 USP40-206ENST00000443711 628 ntTSL 2 BASIC17.95■□□□□ 0.46
CIITAP33076 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CIITAP33076 TERF1P3-201ENST00000505638 1227 ntBASIC17.95■□□□□ 0.46
CIITAP33076 DOC2GP-202ENST00000514950 1163 ntBASIC17.95■□□□□ 0.46
CIITAP33076 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.95■□□□□ 0.46
CIITAP33076 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17.95■□□□□ 0.46
CIITAP33076 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.95■□□□□ 0.46
CIITAP33076 AF228730.6-201ENST00000641497 218 ntBASIC17.95■□□□□ 0.46
CIITAP33076 AC084121.3-201ENST00000641716 218 ntBASIC17.95■□□□□ 0.46
CIITAP33076 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CIITAP33076 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CIITAP33076 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.95■□□□□ 0.46
CIITAP33076 PCDHA1-201ENST00000378133 2726 ntBASIC17.95■□□□□ 0.46
CIITAP33076 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC17.95■□□□□ 0.46
CIITAP33076 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.95■□□□□ 0.46
CIITAP33076 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms