Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
VIMP08670 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC16.2■□□□□ 0.18
VIMP08670 AGAP7P-201ENST00000582299 2062 ntBASIC16.2■□□□□ 0.18
VIMP08670 AGAP14-201ENST00000624701 2060 ntBASIC16.2■□□□□ 0.18
VIMP08670 SRC-202ENST00000373558 4304 ntTSL 5 BASIC16.2■□□□□ 0.18
VIMP08670 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 AC092127.1-201ENST00000567093 3455 ntBASIC16.2■□□□□ 0.18
VIMP08670 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
VIMP08670 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
VIMP08670 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.19■□□□□ 0.18
VIMP08670 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC16.19■□□□□ 0.18
VIMP08670 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
VIMP08670 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
VIMP08670 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
VIMP08670 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 AC117489.1-201ENST00000625169 3217 ntBASIC16.19■□□□□ 0.18
VIMP08670 USP28-214ENST00000545540 3431 ntTSL 2 BASIC16.19■□□□□ 0.18
VIMP08670 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
VIMP08670 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 AC138969.2-201ENST00000532739 9932 ntBASIC16.19■□□□□ 0.18
VIMP08670 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC16.19■□□□□ 0.18
VIMP08670 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
VIMP08670 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
VIMP08670 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.19■□□□□ 0.18
VIMP08670 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
VIMP08670 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.19■□□□□ 0.18
VIMP08670 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
VIMP08670 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC16.19■□□□□ 0.18
VIMP08670 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 AL645929.1-201ENST00000420084 975 ntBASIC16.19■□□□□ 0.18
VIMP08670 TSPY5P-201ENST00000426936 936 ntBASIC16.19■□□□□ 0.18
VIMP08670 AC117947.1-201ENST00000427448 529 ntBASIC16.19■□□□□ 0.18
VIMP08670 PMS2P1-201ENST00000431037 1228 ntBASIC16.19■□□□□ 0.18
VIMP08670 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.19■□□□□ 0.18
VIMP08670 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.19■□□□□ 0.18
VIMP08670 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC16.19■□□□□ 0.18
VIMP08670 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.19■□□□□ 0.18
VIMP08670 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.19■□□□□ 0.18
VIMP08670 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.19■□□□□ 0.18
VIMP08670 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.19■□□□□ 0.18
VIMP08670 AC097493.4-201ENST00000641197 219 ntBASIC16.19■□□□□ 0.18
VIMP08670 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
VIMP08670 AC005912.2-201ENST00000619492 2400 ntBASIC16.19■□□□□ 0.18
VIMP08670 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC16.19■□□□□ 0.18
VIMP08670 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.19■□□□□ 0.18
VIMP08670 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC16.19■□□□□ 0.18
VIMP08670 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
VIMP08670 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC16.19■□□□□ 0.18
VIMP08670 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC16.19■□□□□ 0.18
VIMP08670 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.19■□□□□ 0.18
VIMP08670 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VIMP08670 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
VIMP08670 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VIMP08670 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VIMP08670 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
VIMP08670 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VIMP08670 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VIMP08670 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.18■□□□□ 0.18
VIMP08670 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VIMP08670 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VIMP08670 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VIMP08670 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.18■□□□□ 0.18
VIMP08670 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.18■□□□□ 0.18
VIMP08670 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VIMP08670 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC16.18■□□□□ 0.18
VIMP08670 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VIMP08670 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VIMP08670 TERF1P1-201ENST00000311003 1181 ntBASIC16.18■□□□□ 0.18
VIMP08670 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.18■□□□□ 0.18
VIMP08670 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.18■□□□□ 0.18
VIMP08670 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.18■□□□□ 0.18
VIMP08670 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.18■□□□□ 0.18
VIMP08670 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.18■□□□□ 0.18
VIMP08670 LINC01023-201ENST00000606054 436 ntBASIC16.18■□□□□ 0.18
VIMP08670 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.18■□□□□ 0.18
VIMP08670 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.18■□□□□ 0.18
VIMP08670 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.18■□□□□ 0.18
VIMP08670 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms