Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL2A1P02458 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL2A1P02458 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL2A1P02458 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL2A1P02458 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL2A1P02458 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC18.41■□□□□ 0.54
COL2A1P02458 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL2A1P02458 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL2A1P02458 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
COL2A1P02458 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC18.4■□□□□ 0.54
COL2A1P02458 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
COL2A1P02458 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 AL138709.1-201ENST00000614840 1693 ntBASIC18.4■□□□□ 0.54
COL2A1P02458 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC18.4■□□□□ 0.54
COL2A1P02458 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
COL2A1P02458 B9D1-203ENST00000395615 805 ntTSL 3 BASIC18.4■□□□□ 0.54
COL2A1P02458 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
COL2A1P02458 YBX1P6-201ENST00000442962 1002 ntBASIC18.4■□□□□ 0.54
COL2A1P02458 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC18.4■□□□□ 0.54
COL2A1P02458 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 RPL8-205ENST00000527914 551 ntTSL 3 BASIC18.4■□□□□ 0.54
COL2A1P02458 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC18.4■□□□□ 0.54
COL2A1P02458 DERL2-202ENST00000570848 657 ntTSL 5 BASIC18.4■□□□□ 0.54
COL2A1P02458 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
COL2A1P02458 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
COL2A1P02458 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC18.4■□□□□ 0.54
COL2A1P02458 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
COL2A1P02458 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.4■□□□□ 0.54
COL2A1P02458 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
COL2A1P02458 GCK-209ENST00000616242 2260 ntTSL 5 BASIC18.4■□□□□ 0.54
COL2A1P02458 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 AL138799.1-201ENST00000448213 1675 ntBASIC18.4■□□□□ 0.54
COL2A1P02458 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC18.4■□□□□ 0.54
COL2A1P02458 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC18.4■□□□□ 0.54
COL2A1P02458 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC18.4■□□□□ 0.54
COL2A1P02458 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL2A1P02458 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.4■□□□□ 0.54
COL2A1P02458 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
COL2A1P02458 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
COL2A1P02458 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL2A1P02458 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
COL2A1P02458 RNU1-114P-201ENST00000365297 166 ntBASIC18.39■□□□□ 0.54
COL2A1P02458 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL2A1P02458 AC026954.1-201ENST00000429771 1293 ntBASIC18.39■□□□□ 0.54
COL2A1P02458 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
COL2A1P02458 C2orf27AP3-201ENST00000434123 579 ntBASIC18.39■□□□□ 0.54
COL2A1P02458 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
COL2A1P02458 KRT18P25-201ENST00000508931 1278 ntBASIC18.39■□□□□ 0.54
COL2A1P02458 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC18.39■□□□□ 0.54
COL2A1P02458 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC18.39■□□□□ 0.54
COL2A1P02458 AL354718.3-201ENST00000616414 581 ntBASIC18.39■□□□□ 0.54
COL2A1P02458 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
COL2A1P02458 CR382287.1-201ENST00000623954 586 ntBASIC18.39■□□□□ 0.54
COL2A1P02458 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL2A1P02458 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
COL2A1P02458 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL2A1P02458 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
COL2A1P02458 MFF-204ENST00000353339 2186 ntTSL 5 BASIC18.39■□□□□ 0.54
COL2A1P02458 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL2A1P02458 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL2A1P02458 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL2A1P02458 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.39■□□□□ 0.53
COL2A1P02458 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
COL2A1P02458 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL2A1P02458 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL2A1P02458 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
COL2A1P02458 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.39■□□□□ 0.53
COL2A1P02458 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
COL2A1P02458 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL2A1P02458 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL2A1P02458 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
COL2A1P02458 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL2A1P02458 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL2A1P02458 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC18.39■□□□□ 0.53
COL2A1P02458 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC18.39■□□□□ 0.53
COL2A1P02458 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL2A1P02458 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC18.39■□□□□ 0.53
COL2A1P02458 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC18.39■□□□□ 0.53
COL2A1P02458 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC18.39■□□□□ 0.53
COL2A1P02458 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
COL2A1P02458 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms