Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CTDNEP1O95476 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTDNEP1O95476 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CTDNEP1O95476 MYB-201ENST00000316528 3571 ntTSL 5 BASIC18.5■□□□□ 0.55
CTDNEP1O95476 MYB-241ENST00000616088 3573 ntTSL 5 BASIC18.5■□□□□ 0.55
CTDNEP1O95476 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC18.5■□□□□ 0.55
CTDNEP1O95476 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTDNEP1O95476 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTDNEP1O95476 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC18.5■□□□□ 0.55
CTDNEP1O95476 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTDNEP1O95476 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTDNEP1O95476 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CTDNEP1O95476 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTDNEP1O95476 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CTDNEP1O95476 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CTDNEP1O95476 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTDNEP1O95476 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CTDNEP1O95476 AC136604.1-201ENST00000418535 575 ntBASIC18.5■□□□□ 0.55
CTDNEP1O95476 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.5■□□□□ 0.55
CTDNEP1O95476 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC18.5■□□□□ 0.55
CTDNEP1O95476 DBET-201ENST00000630918 3363 ntBASIC18.5■□□□□ 0.55
CTDNEP1O95476 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC18.5■□□□□ 0.55
CTDNEP1O95476 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTDNEP1O95476 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTDNEP1O95476 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTDNEP1O95476 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CTDNEP1O95476 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTDNEP1O95476 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTDNEP1O95476 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTDNEP1O95476 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC18.49■□□□□ 0.55
CTDNEP1O95476 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CTDNEP1O95476 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC18.49■□□□□ 0.55
CTDNEP1O95476 IMPDH1P4-201ENST00000445028 1534 ntBASIC18.49■□□□□ 0.55
CTDNEP1O95476 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.49■□□□□ 0.55
CTDNEP1O95476 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CTDNEP1O95476 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTDNEP1O95476 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
CTDNEP1O95476 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.49■□□□□ 0.55
CTDNEP1O95476 KRT18P13-201ENST00000400056 1290 ntBASIC18.49■□□□□ 0.55
CTDNEP1O95476 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.49■□□□□ 0.55
CTDNEP1O95476 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.49■□□□□ 0.55
CTDNEP1O95476 HLA-J-203ENST00000494367 1087 ntBASIC18.49■□□□□ 0.55
CTDNEP1O95476 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC18.49■□□□□ 0.55
CTDNEP1O95476 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CTDNEP1O95476 SUOX-214ENST00000551841 906 ntTSL 3 BASIC18.49■□□□□ 0.55
CTDNEP1O95476 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC18.49■□□□□ 0.55
CTDNEP1O95476 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CTDNEP1O95476 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CTDNEP1O95476 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTDNEP1O95476 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTDNEP1O95476 AC087481.3-201ENST00000602886 1894 ntBASIC18.49■□□□□ 0.55
CTDNEP1O95476 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC18.49■□□□□ 0.55
CTDNEP1O95476 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CTDNEP1O95476 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTDNEP1O95476 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC18.49■□□□□ 0.55
CTDNEP1O95476 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CTDNEP1O95476 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC18.49■□□□□ 0.55
CTDNEP1O95476 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.49■□□□□ 0.55
CTDNEP1O95476 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTDNEP1O95476 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CTDNEP1O95476 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC18.49■□□□□ 0.55
CTDNEP1O95476 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC18.49■□□□□ 0.55
CTDNEP1O95476 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC18.49■□□□□ 0.55
CTDNEP1O95476 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC18.48■□□□□ 0.55
CTDNEP1O95476 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTDNEP1O95476 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC18.48■□□□□ 0.55
CTDNEP1O95476 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CTDNEP1O95476 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTDNEP1O95476 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CTDNEP1O95476 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTDNEP1O95476 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CTDNEP1O95476 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTDNEP1O95476 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTDNEP1O95476 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC18.48■□□□□ 0.55
CTDNEP1O95476 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC18.48■□□□□ 0.55
CTDNEP1O95476 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.48■□□□□ 0.55
CTDNEP1O95476 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC18.48■□□□□ 0.55
CTDNEP1O95476 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTDNEP1O95476 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTDNEP1O95476 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC18.48■□□□□ 0.55
CTDNEP1O95476 MIR6080-201ENST00000617359 66 ntBASIC18.48■□□□□ 0.55
CTDNEP1O95476 AC023511.2-201ENST00000618803 211 ntBASIC18.48■□□□□ 0.55
CTDNEP1O95476 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC18.48■□□□□ 0.55
CTDNEP1O95476 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC18.48■□□□□ 0.55
CTDNEP1O95476 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CTDNEP1O95476 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC18.48■□□□□ 0.55
CTDNEP1O95476 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CTDNEP1O95476 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CTDNEP1O95476 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTDNEP1O95476 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC18.48■□□□□ 0.55
CTDNEP1O95476 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.48■□□□□ 0.55
CTDNEP1O95476 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTDNEP1O95476 STK33-217ENST00000534493 1895 ntTSL 2 BASIC18.48■□□□□ 0.55
CTDNEP1O95476 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CTDNEP1O95476 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTDNEP1O95476 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 AL109954.1-202ENST00000564051 2148 ntBASIC18.47■□□□□ 0.55
CTDNEP1O95476 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC18.47■□□□□ 0.55
CTDNEP1O95476 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CTDNEP1O95476 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms