Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 AC243562.1-201ENST00000560672 389 ntBASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 AC006058.4-201ENST00000624016 1670 ntBASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 AKAP8P1-201ENST00000434743 1349 ntBASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 REXO1L1P-202ENST00000608646 1974 ntBASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 AL591424.1-201ENST00000442569 1213 ntBASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 FAM197Y3-203ENST00000618346 717 ntBASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 AC008267.7-201ENST00000624570 1194 ntBASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TCRBV7S3A2A0A539 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms