Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.43■□□□□ 0.22
TDP1Q9NUW8 FAM86LP-201ENST00000478302 853 ntBASIC16.43■□□□□ 0.22
TDP1Q9NUW8 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TDP1Q9NUW8 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC16.43■□□□□ 0.22
TDP1Q9NUW8 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.43■□□□□ 0.22
TDP1Q9NUW8 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.43■□□□□ 0.22
TDP1Q9NUW8 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TDP1Q9NUW8 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TDP1Q9NUW8 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
TDP1Q9NUW8 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.43■□□□□ 0.22
TDP1Q9NUW8 PCDHA12-202ENST00000613593 2588 ntBASIC16.43■□□□□ 0.22
TDP1Q9NUW8 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TDP1Q9NUW8 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TDP1Q9NUW8 KRT8P22-201ENST00000562317 1415 ntBASIC16.43■□□□□ 0.22
TDP1Q9NUW8 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TDP1Q9NUW8 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.43■□□□□ 0.22
TDP1Q9NUW8 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
TDP1Q9NUW8 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TDP1Q9NUW8 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TDP1Q9NUW8 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TDP1Q9NUW8 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 AC006449.6-201ENST00000612330 2296 ntBASIC16.42■□□□□ 0.22
TDP1Q9NUW8 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 KRT18P64-201ENST00000434946 1219 ntBASIC16.42■□□□□ 0.22
TDP1Q9NUW8 AL162726.2-201ENST00000438986 1017 ntBASIC16.42■□□□□ 0.22
TDP1Q9NUW8 AC234783.1-201ENST00000441761 496 ntBASIC16.42■□□□□ 0.22
TDP1Q9NUW8 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.42■□□□□ 0.22
TDP1Q9NUW8 SLED1-202ENST00000512051 380 ntBASIC16.42■□□□□ 0.22
TDP1Q9NUW8 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TDP1Q9NUW8 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 AC136604.1-201ENST00000418535 575 ntBASIC16.41■□□□□ 0.22
TDP1Q9NUW8 HIST1H2BPS3-201ENST00000419683 341 ntBASIC16.41■□□□□ 0.22
TDP1Q9NUW8 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 RPS2P32-201ENST00000439199 892 ntBASIC16.41■□□□□ 0.22
TDP1Q9NUW8 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 NAA38-206ENST00000576384 424 ntTSL 2 BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 BRI3BPP1-201ENST00000594224 787 ntBASIC16.41■□□□□ 0.22
TDP1Q9NUW8 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.41■□□□□ 0.22
TDP1Q9NUW8 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.41■□□□□ 0.22
TDP1Q9NUW8 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms