Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 IGF1-203ENST00000392904 761 ntTSL 5 BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 MPV17-204ENST00000399052 749 ntTSL 4 BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 HLA-DQB2-229ENST00000411527 1059 ntBASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 POM121L10P-201ENST00000436994 1285 ntBASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 CNN2P10-201ENST00000443067 918 ntBASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 SPTLC1P5-201ENST00000450718 252 ntBASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 AC245884.6-201ENST00000515672 1067 ntBASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 AC126915.1-201ENST00000522847 1038 ntBASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF541Q9H0D2 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 POU5F1P6-201ENST00000466990 990 ntBASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 RN7SL720P-201ENST00000488178 304 ntBASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 AP001505.2-201ENST00000616815 443 ntBASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZNF541Q9H0D2 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 SDHD-202ENST00000525291 790 ntTSL 3 BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.91■□□□□ 0.62
ZNF541Q9H0D2 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 AL023775.1-201ENST00000454907 1746 ntBASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms