Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RAD18-205ENST00000421052 582 ntTSL 3 BASIC18.78■□□□□ 0.6
NUP88Q99567 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC18.78■□□□□ 0.6
NUP88Q99567 ZNF890P-202ENST00000530367 1156 ntBASIC18.78■□□□□ 0.6
NUP88Q99567 API5-211ENST00000534695 560 ntTSL 5 BASIC18.78■□□□□ 0.6
NUP88Q99567 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
NUP88Q99567 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC18.78■□□□□ 0.6
NUP88Q99567 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC18.78■□□□□ 0.6
NUP88Q99567 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC18.78■□□□□ 0.6
NUP88Q99567 SRP9-204ENST00000619790 377 ntTSL 2 BASIC18.78■□□□□ 0.6
NUP88Q99567 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC18.78■□□□□ 0.6
NUP88Q99567 AL109936.8-201ENST00000641772 604 ntBASIC18.78■□□□□ 0.6
NUP88Q99567 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC18.78■□□□□ 0.6
NUP88Q99567 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP88Q99567 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC18.78■□□□□ 0.6
NUP88Q99567 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP88Q99567 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP88Q99567 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP88Q99567 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC18.78■□□□□ 0.6
NUP88Q99567 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP88Q99567 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP88Q99567 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC18.78■□□□□ 0.6
NUP88Q99567 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NUP88Q99567 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
NUP88Q99567 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NUP88Q99567 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NUP88Q99567 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
NUP88Q99567 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NUP88Q99567 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
NUP88Q99567 AL662844.4-201ENST00000606367 2838 ntBASIC18.77■□□□□ 0.6
NUP88Q99567 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.77■□□□□ 0.6
NUP88Q99567 SPDYE19P-201ENST00000338590 713 ntBASIC18.77■□□□□ 0.6
NUP88Q99567 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
NUP88Q99567 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NUP88Q99567 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
NUP88Q99567 AL589987.1-201ENST00000453380 819 ntBASIC18.77■□□□□ 0.6
NUP88Q99567 SERBP1P3-201ENST00000459980 809 ntBASIC18.77■□□□□ 0.6
NUP88Q99567 RN7SL692P-201ENST00000464677 288 ntBASIC18.77■□□□□ 0.6
NUP88Q99567 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NUP88Q99567 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC18.77■□□□□ 0.6
NUP88Q99567 AL596325.1-201ENST00000563991 1082 ntBASIC18.77■□□□□ 0.6
NUP88Q99567 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC18.77■□□□□ 0.6
NUP88Q99567 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC18.77■□□□□ 0.6
NUP88Q99567 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
NUP88Q99567 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC18.77■□□□□ 0.6
NUP88Q99567 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NUP88Q99567 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.77■□□□□ 0.6
NUP88Q99567 OVCH1-AS1-204ENST00000641955 5529 ntBASIC18.77■□□□□ 0.6
NUP88Q99567 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NUP88Q99567 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC18.77■□□□□ 0.6
NUP88Q99567 REXO1L8P-201ENST00000604378 1897 ntBASIC18.77■□□□□ 0.6
NUP88Q99567 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
NUP88Q99567 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
NUP88Q99567 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC18.77■□□□□ 0.59
NUP88Q99567 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
NUP88Q99567 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
NUP88Q99567 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
NUP88Q99567 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC18.76■□□□□ 0.59
NUP88Q99567 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
NUP88Q99567 LINC02199-201ENST00000506655 2702 ntBASIC18.76■□□□□ 0.59
NUP88Q99567 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
NUP88Q99567 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
NUP88Q99567 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.76■□□□□ 0.59
NUP88Q99567 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC18.76■□□□□ 0.59
NUP88Q99567 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
NUP88Q99567 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.76■□□□□ 0.59
NUP88Q99567 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC18.76■□□□□ 0.59
NUP88Q99567 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC18.76■□□□□ 0.59
NUP88Q99567 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 AL365330.1-201ENST00000607459 531 ntBASIC18.76■□□□□ 0.59
NUP88Q99567 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
NUP88Q99567 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
NUP88Q99567 AC004461.2-201ENST00000629517 803 ntBASIC18.76■□□□□ 0.59
NUP88Q99567 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC18.76■□□□□ 0.59
NUP88Q99567 AC006449.5-201ENST00000610658 2098 ntBASIC18.76■□□□□ 0.59
NUP88Q99567 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
NUP88Q99567 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC18.76■□□□□ 0.59
NUP88Q99567 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
NUP88Q99567 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC18.76■□□□□ 0.59
NUP88Q99567 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
NUP88Q99567 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NUP88Q99567 AC046158.3-201ENST00000624947 2558 ntBASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 117.4 ms