Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 CSH2-206ENST00000560142 749 ntTSL 5 BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 AC074338.1-201ENST00000416825 156 ntBASIC15.56■□□□□ 0.08
VPS13AQ96RL7 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 PTPA-218ENST00000435132 618 ntTSL 2 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 AP001065.2-201ENST00000617205 644 ntBASIC15.56■□□□□ 0.08
VPS13AQ96RL7 AC006453.4-201ENST00000636949 1252 ntBASIC15.56■□□□□ 0.08
VPS13AQ96RL7 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 AL390961.4-201ENST00000623958 2535 ntBASIC15.56■□□□□ 0.08
VPS13AQ96RL7 AC134407.2-201ENST00000625089 1978 ntBASIC15.56■□□□□ 0.08
VPS13AQ96RL7 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 SDHD-202ENST00000525291 790 ntTSL 3 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 LINC02012-201ENST00000608206 1725 ntBASIC15.56■□□□□ 0.08
VPS13AQ96RL7 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
VPS13AQ96RL7 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 TUBBP5-203ENST00000508529 1334 ntBASIC15.55■□□□□ 0.08
VPS13AQ96RL7 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 IDS-203ENST00000428056 1213 ntTSL 2 BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 AC005730.2-201ENST00000564549 1184 ntBASIC15.55■□□□□ 0.08
VPS13AQ96RL7 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 AC008764.6-201ENST00000595909 2069 ntBASIC15.55■□□□□ 0.08
VPS13AQ96RL7 AC141586.5-201ENST00000624546 2050 ntBASIC15.55■□□□□ 0.08
VPS13AQ96RL7 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 AL138688.1-201ENST00000624851 1594 ntBASIC15.55■□□□□ 0.08
VPS13AQ96RL7 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 CYP51A1P3-201ENST00000400072 1428 ntBASIC15.55■□□□□ 0.08
VPS13AQ96RL7 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.55■□□□□ 0.08
VPS13AQ96RL7 AC005622.1-201ENST00000636801 1703 ntBASIC15.54■□□□□ 0.08
VPS13AQ96RL7 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
VPS13AQ96RL7 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms