Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 REXO1L1P-202ENST00000608646 1974 ntBASIC12.42□□□□□ -0.42
CCDC140Q96MF4 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 AC018892.3-201ENST00000623986 2499 ntBASIC12.42□□□□□ -0.42
CCDC140Q96MF4 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 SPDYE7P-202ENST00000420373 878 ntBASIC12.42□□□□□ -0.42
CCDC140Q96MF4 TSEN15P1-201ENST00000423257 515 ntBASIC12.42□□□□□ -0.42
CCDC140Q96MF4 EEF1DP4-201ENST00000446006 880 ntBASIC12.42□□□□□ -0.42
CCDC140Q96MF4 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 AL139400.1-201ENST00000366220 510 ntBASIC12.41□□□□□ -0.42
CCDC140Q96MF4 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 RBM39-205ENST00000397370 612 ntTSL 2 BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 KRT8P37-201ENST00000451609 1420 ntBASIC12.41□□□□□ -0.42
CCDC140Q96MF4 VILL-207ENST00000465644 1857 ntTSL 5 BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 HLA-J-203ENST00000494367 1087 ntBASIC12.41□□□□□ -0.42
CCDC140Q96MF4 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 AC109322.1-201ENST00000524499 1264 ntBASIC12.41□□□□□ -0.42
CCDC140Q96MF4 AL512356.2-201ENST00000546955 174 ntBASIC12.41□□□□□ -0.42
CCDC140Q96MF4 LITAF-210ENST00000571976 548 ntTSL 2 BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 LITAF-214ENST00000574703 486 ntTSL 2 BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 MIR4453-201ENST00000584019 89 ntBASIC12.41□□□□□ -0.42
CCDC140Q96MF4 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 AP001160.2-201ENST00000596071 487 ntBASIC12.41□□□□□ -0.42
CCDC140Q96MF4 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 AC139530.3-201ENST00000620344 690 ntBASIC12.41□□□□□ -0.42
CCDC140Q96MF4 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC12.41□□□□□ -0.42
CCDC140Q96MF4 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms