Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 KRTAP19-9P-201ENST00000421795 191 ntBASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 NAT9-222ENST00000583476 583 ntTSL 3 BASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 AC006453.4-201ENST00000636949 1252 ntBASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 TP73-209ENST00000603362 1668 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM43Q96BQ3 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 FADS2-212ENST00000522639 360 ntTSL 5 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 FADS2-215ENST00000574708 385 ntTSL 3 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 NKG7-204ENST00000595217 816 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 NDUFV2P1-201ENST00000596415 907 ntBASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM43Q96BQ3 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 PCDHB18P-201ENST00000524813 2368 ntBASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 AC141586.5-201ENST00000624546 2050 ntBASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 AC104457.1-201ENST00000401024 814 ntBASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 TMEM198B-204ENST00000484016 896 ntBASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 KRT18P25-201ENST00000508931 1278 ntBASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 AC015910.1-201ENST00000579400 975 ntBASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 ETV2-208ENST00000621247 941 ntTSL 5 BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 CYP2AB1P-202ENST00000454440 1456 ntBASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM43Q96BQ3 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM43Q96BQ3 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM43Q96BQ3 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM43Q96BQ3 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM43Q96BQ3 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms