Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC18.28■□□□□ 0.52
ERCC4Q92889 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC18.28■□□□□ 0.52
ERCC4Q92889 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC4Q92889 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC4Q92889 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC18.28■□□□□ 0.52
ERCC4Q92889 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.28■□□□□ 0.52
ERCC4Q92889 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
ERCC4Q92889 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC4Q92889 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC4Q92889 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC4Q92889 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC4Q92889 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC18.27■□□□□ 0.52
ERCC4Q92889 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.27■□□□□ 0.52
ERCC4Q92889 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC4Q92889 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC4Q92889 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC4Q92889 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
ERCC4Q92889 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC4Q92889 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC4Q92889 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
ERCC4Q92889 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC4Q92889 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC4Q92889 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC18.27■□□□□ 0.52
ERCC4Q92889 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC4Q92889 AC004870.1-201ENST00000315132 882 ntBASIC18.27■□□□□ 0.52
ERCC4Q92889 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC4Q92889 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC4Q92889 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
ERCC4Q92889 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC4Q92889 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC4Q92889 IGHV3-22-201ENST00000520721 359 ntBASIC18.27■□□□□ 0.52
ERCC4Q92889 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.27■□□□□ 0.52
ERCC4Q92889 AC018845.2-201ENST00000568326 409 ntBASIC18.27■□□□□ 0.52
ERCC4Q92889 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.27■□□□□ 0.52
ERCC4Q92889 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
ERCC4Q92889 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.27■□□□□ 0.52
ERCC4Q92889 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC4Q92889 AC092127.1-201ENST00000567093 3455 ntBASIC18.27■□□□□ 0.52
ERCC4Q92889 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
ERCC4Q92889 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
ERCC4Q92889 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
ERCC4Q92889 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.27■□□□□ 0.51
ERCC4Q92889 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC18.27■□□□□ 0.51
ERCC4Q92889 RER1-203ENST00000378513 3000 ntTSL 3 BASIC18.27■□□□□ 0.51
ERCC4Q92889 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
ERCC4Q92889 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.27■□□□□ 0.51
ERCC4Q92889 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
ERCC4Q92889 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
ERCC4Q92889 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
ERCC4Q92889 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.51
ERCC4Q92889 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ERCC4Q92889 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
ERCC4Q92889 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
ERCC4Q92889 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ERCC4Q92889 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC18.26■□□□□ 0.51
ERCC4Q92889 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
ERCC4Q92889 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
ERCC4Q92889 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
ERCC4Q92889 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ERCC4Q92889 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
ERCC4Q92889 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
ERCC4Q92889 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ERCC4Q92889 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ERCC4Q92889 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ERCC4Q92889 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ERCC4Q92889 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
ERCC4Q92889 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC18.26■□□□□ 0.51
ERCC4Q92889 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ERCC4Q92889 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
ERCC4Q92889 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
ERCC4Q92889 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
ERCC4Q92889 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.26■□□□□ 0.51
ERCC4Q92889 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
ERCC4Q92889 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.26■□□□□ 0.51
ERCC4Q92889 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
ERCC4Q92889 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC18.26■□□□□ 0.51
ERCC4Q92889 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.26■□□□□ 0.51
ERCC4Q92889 AL009183.1-201ENST00000603760 355 ntBASIC18.26■□□□□ 0.51
ERCC4Q92889 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.26■□□□□ 0.51
ERCC4Q92889 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ERCC4Q92889 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC18.26■□□□□ 0.51
ERCC4Q92889 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
ERCC4Q92889 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC18.26■□□□□ 0.51
ERCC4Q92889 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
ERCC4Q92889 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ERCC4Q92889 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
ERCC4Q92889 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ERCC4Q92889 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ERCC4Q92889 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
ERCC4Q92889 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC18.26■□□□□ 0.51
ERCC4Q92889 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
ERCC4Q92889 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ERCC4Q92889 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC18.25■□□□□ 0.51
ERCC4Q92889 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ERCC4Q92889 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC18.25■□□□□ 0.51
ERCC4Q92889 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
ERCC4Q92889 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
ERCC4Q92889 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ERCC4Q92889 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ERCC4Q92889 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms