Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.32■□□□□ 0.2
SHROOM3Q8TF72 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SHROOM3Q8TF72 AC100757.3-201ENST00000622361 1406 ntBASIC16.32■□□□□ 0.2
SHROOM3Q8TF72 AC092127.1-201ENST00000567093 3455 ntBASIC16.32■□□□□ 0.2
SHROOM3Q8TF72 CICP13-201ENST00000422015 2789 ntBASIC16.32■□□□□ 0.2
SHROOM3Q8TF72 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SHROOM3Q8TF72 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 CETN4P-206ENST00000642099 2168 ntBASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 PHKG1P2-201ENST00000457537 863 ntBASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 AP005018.1-201ENST00000525475 301 ntBASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 REXO1L1P-202ENST00000608646 1974 ntBASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 AC004840.1-201ENST00000636359 365 ntBASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 AC105917.1-201ENST00000506637 2539 ntBASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHROOM3Q8TF72 AL162727.3-201ENST00000635661 2787 ntBASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 TARDBPP1-201ENST00000442013 1203 ntBASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 KLF2P3-201ENST00000451977 1087 ntBASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 AC026979.3-201ENST00000607315 403 ntBASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SHROOM3Q8TF72 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 DUX4L27-201ENST00000554796 1261 ntBASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms