Protein–RNA interactions for Protein: Q8N9L1

ZIC4, Zinc finger protein ZIC 4, humanhuman

Predictions only

Length 334 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC4Q8N9L1 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 TSSK5P-201ENST00000423978 907 ntBASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 AL512361.1-201ENST00000554200 418 ntBASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 MIR4313-201ENST00000580760 101 ntBASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 AC005498.2-205ENST00000593218 784 ntBASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 AC097359.3-201ENST00000603982 1210 ntBASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ZIC4Q8N9L1 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 AC087499.5-201ENST00000452760 1342 ntBASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 HNRNPUP1-201ENST00000554987 333 ntBASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 AL844908.2-201ENST00000609461 460 ntBASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 AP003680.1-201ENST00000598970 3660 ntBASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.15□□□□□ -0.14
ZIC4Q8N9L1 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC14.14□□□□□ -0.15
ZIC4Q8N9L1 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ZIC4Q8N9L1 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
ZIC4Q8N9L1 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.14□□□□□ -0.15
ZIC4Q8N9L1 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
ZIC4Q8N9L1 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.14□□□□□ -0.15
ZIC4Q8N9L1 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
ZIC4Q8N9L1 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.14□□□□□ -0.15
ZIC4Q8N9L1 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms