Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 FADS2-215ENST00000574708 385 ntTSL 3 BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 NKG7-204ENST00000595217 816 ntTSL 2 BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 AL451050.2-201ENST00000606967 682 ntBASIC21.46■■□□□ 1.03
NPHP3Q7Z494 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 AC141586.5-201ENST00000624546 2050 ntBASIC21.46■■□□□ 1.03
NPHP3Q7Z494 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 FOS-202ENST00000535987 1402 ntTSL 2 BASIC21.46■■□□□ 1.03
NPHP3Q7Z494 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
NPHP3Q7Z494 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 KRTAP19-9P-201ENST00000421795 191 ntBASIC21.45■■□□□ 1.02
NPHP3Q7Z494 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 AC126915.1-201ENST00000522847 1038 ntBASIC21.45■■□□□ 1.02
NPHP3Q7Z494 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 AC128714.1-201ENST00000637035 887 ntBASIC21.45■■□□□ 1.02
NPHP3Q7Z494 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP3Q7Z494 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC21.44■■□□□ 1.02
NPHP3Q7Z494 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC21.44■■□□□ 1.02
NPHP3Q7Z494 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP3Q7Z494 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC21.44■■□□□ 1.02
NPHP3Q7Z494 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP3Q7Z494 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
NPHP3Q7Z494 LDHBP1-201ENST00000455730 1119 ntBASIC21.44■■□□□ 1.02
NPHP3Q7Z494 IMP3P2-201ENST00000489760 475 ntBASIC21.44■■□□□ 1.02
NPHP3Q7Z494 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC21.44■■□□□ 1.02
NPHP3Q7Z494 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC21.44■■□□□ 1.02
NPHP3Q7Z494 SPCS2P2-201ENST00000603270 608 ntBASIC21.44■■□□□ 1.02
NPHP3Q7Z494 U62317.3-201ENST00000608319 855 ntBASIC21.44■■□□□ 1.02
NPHP3Q7Z494 ETV2-208ENST00000621247 941 ntTSL 5 BASIC21.44■■□□□ 1.02
NPHP3Q7Z494 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP3Q7Z494 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC21.44■■□□□ 1.02
NPHP3Q7Z494 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP3Q7Z494 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP3Q7Z494 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC21.44■■□□□ 1.02
NPHP3Q7Z494 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC21.44■■□□□ 1.02
NPHP3Q7Z494 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP3Q7Z494 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP3Q7Z494 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC21.43■■□□□ 1.02
NPHP3Q7Z494 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP3Q7Z494 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP3Q7Z494 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP3Q7Z494 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC21.43■■□□□ 1.02
NPHP3Q7Z494 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP3Q7Z494 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC21.43■■□□□ 1.02
NPHP3Q7Z494 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP3Q7Z494 CNN2P10-201ENST00000443067 918 ntBASIC21.43■■□□□ 1.02
NPHP3Q7Z494 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP3Q7Z494 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP3Q7Z494 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC21.43■■□□□ 1.02
NPHP3Q7Z494 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP3Q7Z494 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP3Q7Z494 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
NPHP3Q7Z494 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC21.43■■□□□ 1.02
NPHP3Q7Z494 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP3Q7Z494 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP3Q7Z494 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP3Q7Z494 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC21.43■■□□□ 1.02
NPHP3Q7Z494 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP3Q7Z494 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP3Q7Z494 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP3Q7Z494 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP3Q7Z494 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP3Q7Z494 AL133267.1-201ENST00000398220 340 ntBASIC21.42■■□□□ 1.02
NPHP3Q7Z494 DEF8-202ENST00000418391 852 ntTSL 2 BASIC21.42■■□□□ 1.02
NPHP3Q7Z494 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP3Q7Z494 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP3Q7Z494 AC097724.1-201ENST00000609581 426 ntBASIC21.42■■□□□ 1.02
NPHP3Q7Z494 AC134407.2-201ENST00000625089 1978 ntBASIC21.42■■□□□ 1.02
NPHP3Q7Z494 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC21.42■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms