Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 FRMD6-AS1-201ENST00000617151 2229 ntBASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 KLF2P3-201ENST00000451977 1087 ntBASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 AL139010.1-201ENST00000454878 894 ntBASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 AC105021.1-202ENST00000570572 669 ntBASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
NUP54Q7Z3B4 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 AC018695.7-201ENST00000624587 2492 ntBASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 AL139384.1-201ENST00000612143 3047 ntBASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 AC051619.7-201ENST00000568314 623 ntBASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 RN7SL828P-201ENST00000607615 303 ntBASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC14.87□□□□□ -0.03
NUP54Q7Z3B4 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms