Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 CFL1-214ENST00000534769 758 ntTSL 2 BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 BX539320.1-201ENST00000623759 877 ntBASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 BTBD6P1-201ENST00000412176 1267 ntBASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 CYP46A4P-201ENST00000414953 267 ntBASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 AP001505.2-201ENST00000616815 443 ntBASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC10.55□□□□□ -0.72
VPS13DQ5THJ4 FOS-202ENST00000535987 1402 ntTSL 2 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 MIR1202-201ENST00000408529 83 ntBASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 SLC25A24P2-201ENST00000415059 510 ntBASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 TBCB-211ENST00000589996 724 ntTSL 3 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 HSPB1P2-201ENST00000448722 546 ntBASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 AL391280.1-201ENST00000506969 1062 ntBASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 KLK11-210ENST00000600362 759 ntTSL 3 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 RNF165-205ENST00000588679 2904 ntBASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 ACKR1-201ENST00000368121 1240 ntBASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 MPRIPP1-201ENST00000452433 1089 ntBASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 EIF4HP1-201ENST00000453115 687 ntBASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 MIR7845-201ENST00000618396 99 ntBASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 AC022211.2-201ENST00000585075 2527 ntBASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 FZD10-202ENST00000539839 3282 ntBASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 SMS-201ENST00000379404 1174 ntTSL 3 BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 ACTG1P2-201ENST00000415776 1125 ntBASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 ACTG1P11-201ENST00000425411 1125 ntBASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
VPS13DQ5THJ4 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.72
VPS13DQ5THJ4 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
VPS13DQ5THJ4 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
VPS13DQ5THJ4 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC10.53□□□□□ -0.72
VPS13DQ5THJ4 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC10.53□□□□□ -0.72
VPS13DQ5THJ4 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC10.53□□□□□ -0.72
VPS13DQ5THJ4 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC10.53□□□□□ -0.72
VPS13DQ5THJ4 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
VPS13DQ5THJ4 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
VPS13DQ5THJ4 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC10.53□□□□□ -0.72
VPS13DQ5THJ4 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC10.53□□□□□ -0.72
VPS13DQ5THJ4 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC10.53□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 128.4 ms