Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC12.14□□□□□ -0.47
FOXA3P55318 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
FOXA3P55318 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC12.14□□□□□ -0.47
FOXA3P55318 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
FOXA3P55318 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC12.14□□□□□ -0.47
FOXA3P55318 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 USP28-214ENST00000545540 3431 ntTSL 2 BASIC12.14□□□□□ -0.47
FOXA3P55318 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
FOXA3P55318 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA3P55318 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC12.13□□□□□ -0.47
FOXA3P55318 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC12.13□□□□□ -0.47
FOXA3P55318 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 AC007191.1-201ENST00000623179 2995 ntBASIC12.13□□□□□ -0.47
FOXA3P55318 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
FOXA3P55318 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC12.13□□□□□ -0.47
FOXA3P55318 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
FOXA3P55318 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 TSPY22P-201ENST00000427496 604 ntBASIC12.13□□□□□ -0.47
FOXA3P55318 SPDYE13P-201ENST00000445314 798 ntBASIC12.13□□□□□ -0.47
FOXA3P55318 AC091607.1-201ENST00000490318 1060 ntBASIC12.13□□□□□ -0.47
FOXA3P55318 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC12.13□□□□□ -0.47
FOXA3P55318 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC12.13□□□□□ -0.47
FOXA3P55318 AC073592.4-201ENST00000623827 446 ntBASIC12.13□□□□□ -0.47
FOXA3P55318 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC12.13□□□□□ -0.47
FOXA3P55318 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC12.13□□□□□ -0.47
FOXA3P55318 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC12.13□□□□□ -0.47
FOXA3P55318 TP73-AS1-210ENST00000637775 1455 ntBASIC12.13□□□□□ -0.47
FOXA3P55318 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC12.13□□□□□ -0.47
FOXA3P55318 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 LINC00552-201ENST00000625151 2579 ntBASIC12.13□□□□□ -0.47
FOXA3P55318 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA3P55318 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
FOXA3P55318 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
FOXA3P55318 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
FOXA3P55318 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC12.12□□□□□ -0.47
FOXA3P55318 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
FOXA3P55318 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
FOXA3P55318 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC12.12□□□□□ -0.47
FOXA3P55318 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
FOXA3P55318 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC12.12□□□□□ -0.47
FOXA3P55318 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
FOXA3P55318 REXO1L3P-201ENST00000622202 1288 ntBASIC12.12□□□□□ -0.47
FOXA3P55318 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
FOXA3P55318 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC12.12□□□□□ -0.47
FOXA3P55318 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 LGALS8-AS1-201ENST00000487567 1457 ntBASIC12.12□□□□□ -0.47
FOXA3P55318 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
FOXA3P55318 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC12.12□□□□□ -0.47
FOXA3P55318 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC12.12□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms