Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CDH4P55283 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDH4P55283 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDH4P55283 FER1L4-210ENST00000615531 5998 ntBASIC16.36■□□□□ 0.21
CDH4P55283 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.36■□□□□ 0.21
CDH4P55283 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
CDH4P55283 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.36■□□□□ 0.21
CDH4P55283 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.36■□□□□ 0.21
CDH4P55283 AC114501.2-201ENST00000439631 535 ntBASIC16.36■□□□□ 0.21
CDH4P55283 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.36■□□□□ 0.21
CDH4P55283 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.36■□□□□ 0.21
CDH4P55283 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.36■□□□□ 0.21
CDH4P55283 AC135586.1-201ENST00000539323 574 ntBASIC16.36■□□□□ 0.21
CDH4P55283 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.36■□□□□ 0.21
CDH4P55283 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.36■□□□□ 0.21
CDH4P55283 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.36■□□□□ 0.21
CDH4P55283 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 AC074044.1-201ENST00000609673 707 ntBASIC16.36■□□□□ 0.21
CDH4P55283 AC009118.2-201ENST00000613275 655 ntBASIC16.36■□□□□ 0.21
CDH4P55283 AC004840.1-201ENST00000636359 365 ntBASIC16.36■□□□□ 0.21
CDH4P55283 AL109936.8-201ENST00000641772 604 ntBASIC16.36■□□□□ 0.21
CDH4P55283 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 Z97205.2-201ENST00000564697 1639 ntBASIC16.36■□□□□ 0.21
CDH4P55283 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.36■□□□□ 0.21
CDH4P55283 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.36■□□□□ 0.21
CDH4P55283 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.36■□□□□ 0.21
CDH4P55283 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.36■□□□□ 0.21
CDH4P55283 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.36■□□□□ 0.21
CDH4P55283 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH4P55283 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CDH4P55283 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH4P55283 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.35■□□□□ 0.21
CDH4P55283 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
CDH4P55283 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH4P55283 AC024909.3-201ENST00000611513 2257 ntBASIC16.35■□□□□ 0.21
CDH4P55283 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.35■□□□□ 0.21
CDH4P55283 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.35■□□□□ 0.21
CDH4P55283 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH4P55283 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH4P55283 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.35■□□□□ 0.21
CDH4P55283 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
CDH4P55283 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH4P55283 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CDH4P55283 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CDH4P55283 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.35■□□□□ 0.21
CDH4P55283 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH4P55283 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.35■□□□□ 0.21
CDH4P55283 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.35■□□□□ 0.21
CDH4P55283 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
CDH4P55283 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.35■□□□□ 0.21
CDH4P55283 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.35■□□□□ 0.21
CDH4P55283 RN7SL204P-201ENST00000582831 262 ntBASIC16.35■□□□□ 0.21
CDH4P55283 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
CDH4P55283 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.35■□□□□ 0.21
CDH4P55283 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.35■□□□□ 0.21
CDH4P55283 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH4P55283 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH4P55283 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.35■□□□□ 0.21
CDH4P55283 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.35■□□□□ 0.21
CDH4P55283 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CDH4P55283 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.35■□□□□ 0.21
CDH4P55283 AC112504.1-201ENST00000623415 1841 ntBASIC16.35■□□□□ 0.21
CDH4P55283 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.35■□□□□ 0.21
CDH4P55283 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH4P55283 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH4P55283 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.35■□□□□ 0.21
CDH4P55283 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH4P55283 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH4P55283 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CDH4P55283 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.35■□□□□ 0.21
CDH4P55283 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CDH4P55283 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.34■□□□□ 0.21
CDH4P55283 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.34■□□□□ 0.21
CDH4P55283 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CDH4P55283 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CDH4P55283 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms