Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 USE1-206ENST00000595101 1776 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGCS2P54868 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18.38■□□□□ 0.53
HMGCS2P54868 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGCS2P54868 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
HMGCS2P54868 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
HMGCS2P54868 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
HMGCS2P54868 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGCS2P54868 FO681548.1-201ENST00000455617 1132 ntBASIC18.38■□□□□ 0.53
HMGCS2P54868 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC18.38■□□□□ 0.53
HMGCS2P54868 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 MIR6869-201ENST00000619434 62 ntBASIC18.38■□□□□ 0.53
HMGCS2P54868 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
HMGCS2P54868 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC18.38■□□□□ 0.53
HMGCS2P54868 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
HMGCS2P54868 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
HMGCS2P54868 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGCS2P54868 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
HMGCS2P54868 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGCS2P54868 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC18.37■□□□□ 0.53
HMGCS2P54868 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
HMGCS2P54868 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGCS2P54868 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGCS2P54868 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGCS2P54868 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGCS2P54868 AC092933.1-201ENST00000393644 945 ntBASIC18.37■□□□□ 0.53
HMGCS2P54868 BAATP1-201ENST00000412284 1225 ntBASIC18.37■□□□□ 0.53
HMGCS2P54868 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC18.37■□□□□ 0.53
HMGCS2P54868 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC18.37■□□□□ 0.53
HMGCS2P54868 AL355994.2-201ENST00000447882 704 ntBASIC18.37■□□□□ 0.53
HMGCS2P54868 AC007551.1-201ENST00000457394 519 ntBASIC18.37■□□□□ 0.53
HMGCS2P54868 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGCS2P54868 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGCS2P54868 RNA5SP412-201ENST00000516234 123 ntBASIC18.37■□□□□ 0.53
HMGCS2P54868 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGCS2P54868 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
HMGCS2P54868 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC18.37■□□□□ 0.53
HMGCS2P54868 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC18.37■□□□□ 0.53
HMGCS2P54868 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC18.37■□□□□ 0.53
HMGCS2P54868 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGCS2P54868 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.37■□□□□ 0.53
HMGCS2P54868 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGCS2P54868 AC005252.2-201ENST00000624630 1141 ntBASIC18.37■□□□□ 0.53
HMGCS2P54868 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGCS2P54868 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGCS2P54868 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGCS2P54868 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGCS2P54868 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGCS2P54868 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGCS2P54868 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGCS2P54868 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGCS2P54868 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
HMGCS2P54868 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.37■□□□□ 0.53
HMGCS2P54868 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
HMGCS2P54868 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.37■□□□□ 0.53
HMGCS2P54868 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGCS2P54868 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
HMGCS2P54868 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGCS2P54868 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.36■□□□□ 0.53
HMGCS2P54868 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGCS2P54868 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGCS2P54868 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGCS2P54868 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGCS2P54868 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGCS2P54868 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HMGCS2P54868 GZMB-202ENST00000382540 816 ntTSL 5 BASIC18.36■□□□□ 0.53
HMGCS2P54868 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGCS2P54868 BRWD1P1-201ENST00000401091 371 ntBASIC18.36■□□□□ 0.53
HMGCS2P54868 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGCS2P54868 TUBB1P2-201ENST00000422712 1306 ntBASIC18.36■□□□□ 0.53
HMGCS2P54868 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC18.36■□□□□ 0.53
HMGCS2P54868 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC18.36■□□□□ 0.53
HMGCS2P54868 FTH1P14-201ENST00000482930 551 ntBASIC18.36■□□□□ 0.53
HMGCS2P54868 TUBB1P1-201ENST00000503144 1300 ntBASIC18.36■□□□□ 0.53
HMGCS2P54868 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC18.36■□□□□ 0.53
HMGCS2P54868 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.36■□□□□ 0.53
HMGCS2P54868 AP000812.2-201ENST00000538934 718 ntBASIC18.36■□□□□ 0.53
HMGCS2P54868 AC009486.1-201ENST00000569860 813 ntBASIC18.36■□□□□ 0.53
HMGCS2P54868 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC18.36■□□□□ 0.53
HMGCS2P54868 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC18.36■□□□□ 0.53
HMGCS2P54868 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC18.36■□□□□ 0.53
HMGCS2P54868 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms