Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC18.49■□□□□ 0.55
CTCFP49711 Z97180.1-201ENST00000445173 988 ntBASIC18.49■□□□□ 0.55
CTCFP49711 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CTCFP49711 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC18.49■□□□□ 0.55
CTCFP49711 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC18.49■□□□□ 0.55
CTCFP49711 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CTCFP49711 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.49■□□□□ 0.55
CTCFP49711 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.49■□□□□ 0.55
CTCFP49711 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CTCFP49711 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CTCFP49711 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CTCFP49711 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.49■□□□□ 0.55
CTCFP49711 PC-204ENST00000524491 1714 ntTSL 2 BASIC18.49■□□□□ 0.55
CTCFP49711 AC018735.1-201ENST00000437208 1502 ntBASIC18.49■□□□□ 0.55
CTCFP49711 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CTCFP49711 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTCFP49711 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTCFP49711 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CTCFP49711 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTCFP49711 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.48■□□□□ 0.55
CTCFP49711 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CTCFP49711 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTCFP49711 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CTCFP49711 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTCFP49711 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
CTCFP49711 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CTCFP49711 POM121L10P-201ENST00000436994 1285 ntBASIC18.48■□□□□ 0.55
CTCFP49711 SPTLC1P5-201ENST00000450718 252 ntBASIC18.48■□□□□ 0.55
CTCFP49711 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
CTCFP49711 AC120045.2-201ENST00000567334 178 ntBASIC18.48■□□□□ 0.55
CTCFP49711 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC18.48■□□□□ 0.55
CTCFP49711 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CTCFP49711 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CTCFP49711 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC18.48■□□□□ 0.55
CTCFP49711 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC18.48■□□□□ 0.55
CTCFP49711 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CTCFP49711 AC138649.2-201ENST00000615886 705 ntBASIC18.48■□□□□ 0.55
CTCFP49711 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
CTCFP49711 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CTCFP49711 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTCFP49711 AC108860.2-201ENST00000562760 2183 ntBASIC18.48■□□□□ 0.55
CTCFP49711 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.48■□□□□ 0.55
CTCFP49711 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.48■□□□□ 0.55
CTCFP49711 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CTCFP49711 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC18.48■□□□□ 0.55
CTCFP49711 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC18.48■□□□□ 0.55
CTCFP49711 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CTCFP49711 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTCFP49711 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTCFP49711 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTCFP49711 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTCFP49711 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTCFP49711 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC18.47■□□□□ 0.55
CTCFP49711 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTCFP49711 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTCFP49711 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CTCFP49711 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
CTCFP49711 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CTCFP49711 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTCFP49711 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.47■□□□□ 0.55
CTCFP49711 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CTCFP49711 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTCFP49711 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.47■□□□□ 0.55
CTCFP49711 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTCFP49711 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC18.47■□□□□ 0.55
CTCFP49711 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTCFP49711 PKIG-203ENST00000372887 769 ntTSL 3 BASIC18.47■□□□□ 0.55
CTCFP49711 UFM1-202ENST00000379649 846 ntTSL 4 BASIC18.47■□□□□ 0.55
CTCFP49711 AC016700.1-201ENST00000429424 312 ntBASIC18.47■□□□□ 0.55
CTCFP49711 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC18.47■□□□□ 0.55
CTCFP49711 LY6E-208ENST00000520531 490 ntTSL 2 BASIC18.47■□□□□ 0.55
CTCFP49711 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC18.47■□□□□ 0.55
CTCFP49711 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CTCFP49711 AL133499.1-201ENST00000596207 608 ntBASIC18.47■□□□□ 0.55
CTCFP49711 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTCFP49711 LINC01115-203ENST00000606068 577 ntBASIC18.47■□□□□ 0.55
CTCFP49711 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTCFP49711 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTCFP49711 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTCFP49711 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.47■□□□□ 0.55
CTCFP49711 USE1-206ENST00000595101 1776 ntTSL 2 BASIC18.47■□□□□ 0.55
CTCFP49711 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTCFP49711 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.47■□□□□ 0.55
CTCFP49711 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC18.47■□□□□ 0.55
CTCFP49711 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.47■□□□□ 0.55
CTCFP49711 AL355312.1-201ENST00000407115 2176 ntBASIC18.47■□□□□ 0.55
CTCFP49711 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTCFP49711 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTCFP49711 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.46■□□□□ 0.55
CTCFP49711 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
CTCFP49711 Z97205.2-201ENST00000564697 1639 ntBASIC18.46■□□□□ 0.55
CTCFP49711 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CTCFP49711 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CTCFP49711 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CTCFP49711 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
CTCFP49711 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CTCFP49711 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC18.46■□□□□ 0.55
CTCFP49711 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CTCFP49711 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CTCFP49711 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms