Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC20.69■□□□□ 0.9
COL18A1P39060 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC20.69■□□□□ 0.9
COL18A1P39060 AC044849.1-201ENST00000519737 1188 ntBASIC20.69■□□□□ 0.9
COL18A1P39060 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
COL18A1P39060 AC079328.1-201ENST00000560358 952 ntBASIC20.69■□□□□ 0.9
COL18A1P39060 AC106820.3-201ENST00000561653 397 ntBASIC20.69■□□□□ 0.9
COL18A1P39060 NDUFV2P1-201ENST00000596415 907 ntBASIC20.69■□□□□ 0.9
COL18A1P39060 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL18A1P39060 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
COL18A1P39060 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL18A1P39060 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
COL18A1P39060 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL18A1P39060 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC20.68■□□□□ 0.9
COL18A1P39060 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
COL18A1P39060 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL18A1P39060 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
COL18A1P39060 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL18A1P39060 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL18A1P39060 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL18A1P39060 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL18A1P39060 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL18A1P39060 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL18A1P39060 MPV17-205ENST00000402310 906 ntTSL 5 BASIC20.68■□□□□ 0.9
COL18A1P39060 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC20.68■□□□□ 0.9
COL18A1P39060 UPF3AP2-201ENST00000457924 1132 ntBASIC20.68■□□□□ 0.9
COL18A1P39060 RN7SL48P-201ENST00000579283 293 ntBASIC20.68■□□□□ 0.9
COL18A1P39060 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC20.68■□□□□ 0.9
COL18A1P39060 RETN-203ENST00000629642 400 ntTSL 5 BASIC20.68■□□□□ 0.9
COL18A1P39060 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL18A1P39060 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL18A1P39060 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL18A1P39060 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC20.68■□□□□ 0.9
COL18A1P39060 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
COL18A1P39060 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
COL18A1P39060 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL18A1P39060 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL18A1P39060 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC20.68■□□□□ 0.9
COL18A1P39060 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL18A1P39060 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL18A1P39060 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL18A1P39060 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
COL18A1P39060 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COL18A1P39060 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC20.67■□□□□ 0.9
COL18A1P39060 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC20.67■□□□□ 0.9
COL18A1P39060 FOS-206ENST00000555347 1280 ntTSL 2 BASIC20.67■□□□□ 0.9
COL18A1P39060 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC20.67■□□□□ 0.9
COL18A1P39060 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL18A1P39060 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.67■□□□□ 0.9
COL18A1P39060 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL18A1P39060 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
COL18A1P39060 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL18A1P39060 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL18A1P39060 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL18A1P39060 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
COL18A1P39060 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL18A1P39060 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL18A1P39060 AC011477.6-201ENST00000604980 1927 ntBASIC20.67■□□□□ 0.9
COL18A1P39060 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL18A1P39060 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC20.67■□□□□ 0.9
COL18A1P39060 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC20.67■□□□□ 0.9
COL18A1P39060 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
COL18A1P39060 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
COL18A1P39060 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL18A1P39060 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL18A1P39060 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL18A1P39060 SERPINA13P-202ENST00000478994 924 ntBASIC20.67■□□□□ 0.9
COL18A1P39060 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC20.67■□□□□ 0.9
COL18A1P39060 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC20.67■□□□□ 0.9
COL18A1P39060 AC091812.3-201ENST00000621362 345 ntBASIC20.67■□□□□ 0.9
COL18A1P39060 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL18A1P39060 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL18A1P39060 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COL18A1P39060 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL18A1P39060 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL18A1P39060 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL18A1P39060 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL18A1P39060 AL354877.1-201ENST00000424412 413 ntBASIC20.66■□□□□ 0.9
COL18A1P39060 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC20.66■□□□□ 0.9
COL18A1P39060 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC20.66■□□□□ 0.9
COL18A1P39060 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC20.66■□□□□ 0.9
COL18A1P39060 IMP3P2-201ENST00000489760 475 ntBASIC20.66■□□□□ 0.9
COL18A1P39060 RNF41-210ENST00000552244 716 ntTSL 3 BASIC20.66■□□□□ 0.9
COL18A1P39060 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC20.66■□□□□ 0.9
COL18A1P39060 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL18A1P39060 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
COL18A1P39060 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC20.66■□□□□ 0.9
COL18A1P39060 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL18A1P39060 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
COL18A1P39060 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
COL18A1P39060 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC20.66■□□□□ 0.9
COL18A1P39060 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL18A1P39060 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL18A1P39060 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL18A1P39060 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL18A1P39060 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL18A1P39060 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL18A1P39060 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC20.65■□□□□ 0.9
COL18A1P39060 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC20.65■□□□□ 0.9
COL18A1P39060 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
COL18A1P39060 SMS-201ENST00000379404 1174 ntTSL 3 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms