Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC19.04■□□□□ 0.64
BRCA1P38398 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRCA1P38398 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRCA1P38398 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
BRCA1P38398 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRCA1P38398 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC19.04■□□□□ 0.64
BRCA1P38398 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRCA1P38398 AL136309.1-201ENST00000403917 691 ntBASIC19.04■□□□□ 0.64
BRCA1P38398 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
BRCA1P38398 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
BRCA1P38398 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC19.04■□□□□ 0.64
BRCA1P38398 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC19.04■□□□□ 0.64
BRCA1P38398 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
BRCA1P38398 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
BRCA1P38398 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRCA1P38398 PRSS30P-206ENST00000641773 873 ntBASIC19.04■□□□□ 0.64
BRCA1P38398 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
BRCA1P38398 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC19.04■□□□□ 0.64
BRCA1P38398 AC005915.1-201ENST00000624912 2018 ntBASIC19.04■□□□□ 0.64
BRCA1P38398 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRCA1P38398 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRCA1P38398 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRCA1P38398 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC19.04■□□□□ 0.64
BRCA1P38398 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRCA1P38398 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
BRCA1P38398 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
BRCA1P38398 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRCA1P38398 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC19.03■□□□□ 0.64
BRCA1P38398 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRCA1P38398 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC19.03■□□□□ 0.64
BRCA1P38398 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRCA1P38398 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC19.03■□□□□ 0.64
BRCA1P38398 LY6E-208ENST00000520531 490 ntTSL 2 BASIC19.03■□□□□ 0.64
BRCA1P38398 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC19.03■□□□□ 0.64
BRCA1P38398 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRCA1P38398 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC19.03■□□□□ 0.64
BRCA1P38398 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC19.03■□□□□ 0.64
BRCA1P38398 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRCA1P38398 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC19.03■□□□□ 0.64
BRCA1P38398 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
BRCA1P38398 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC19.03■□□□□ 0.64
BRCA1P38398 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
BRCA1P38398 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRCA1P38398 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRCA1P38398 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRCA1P38398 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC19.03■□□□□ 0.64
BRCA1P38398 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
BRCA1P38398 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.03■□□□□ 0.64
BRCA1P38398 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.03■□□□□ 0.64
BRCA1P38398 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
BRCA1P38398 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRCA1P38398 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
BRCA1P38398 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRCA1P38398 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
BRCA1P38398 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRCA1P38398 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRCA1P38398 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC19.03■□□□□ 0.64
BRCA1P38398 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC19.03■□□□□ 0.64
BRCA1P38398 RN7SL8P-201ENST00000461771 266 ntBASIC19.03■□□□□ 0.64
BRCA1P38398 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
BRCA1P38398 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC19.03■□□□□ 0.64
BRCA1P38398 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC19.03■□□□□ 0.64
BRCA1P38398 COX6A1P2-201ENST00000620597 330 ntBASIC19.03■□□□□ 0.64
BRCA1P38398 AC068587.8-201ENST00000641239 219 ntBASIC19.03■□□□□ 0.64
BRCA1P38398 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
BRCA1P38398 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
BRCA1P38398 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.03■□□□□ 0.64
BRCA1P38398 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.02■□□□□ 0.64
BRCA1P38398 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC19.02■□□□□ 0.64
BRCA1P38398 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
BRCA1P38398 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
BRCA1P38398 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
BRCA1P38398 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
BRCA1P38398 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
BRCA1P38398 AC012618.1-201ENST00000461223 412 ntBASIC19.02■□□□□ 0.64
BRCA1P38398 AC135983.4-201ENST00000564116 1262 ntBASIC19.02■□□□□ 0.64
BRCA1P38398 BNIP3P13-201ENST00000599968 566 ntBASIC19.02■□□□□ 0.64
BRCA1P38398 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC19.02■□□□□ 0.64
BRCA1P38398 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
BRCA1P38398 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
BRCA1P38398 LRRC59-203ENST00000576448 1531 ntBASIC19.02■□□□□ 0.63
BRCA1P38398 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
BRCA1P38398 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.63
BRCA1P38398 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.02■□□□□ 0.63
BRCA1P38398 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC19.02■□□□□ 0.63
BRCA1P38398 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
BRCA1P38398 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
BRCA1P38398 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
BRCA1P38398 AC125604.1-201ENST00000496255 707 ntBASIC19.01■□□□□ 0.63
BRCA1P38398 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
BRCA1P38398 PCBP2-OT1-201ENST00000634357 590 ntBASIC19.01■□□□□ 0.63
BRCA1P38398 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.01■□□□□ 0.63
BRCA1P38398 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC19.01■□□□□ 0.63
BRCA1P38398 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
BRCA1P38398 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
BRCA1P38398 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
BRCA1P38398 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
BRCA1P38398 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC19.01■□□□□ 0.63
BRCA1P38398 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
BRCA1P38398 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms