Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.3■□□□□ 0.2
RPA3P35244 AC010507.1-201ENST00000633895 436 ntBASIC16.3■□□□□ 0.2
RPA3P35244 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
RPA3P35244 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.3■□□□□ 0.2
RPA3P35244 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.3■□□□□ 0.2
RPA3P35244 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.3■□□□□ 0.2
RPA3P35244 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.3■□□□□ 0.2
RPA3P35244 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
RPA3P35244 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.3■□□□□ 0.2
RPA3P35244 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
RPA3P35244 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RPA3P35244 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.29■□□□□ 0.2
RPA3P35244 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.29■□□□□ 0.2
RPA3P35244 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.29■□□□□ 0.2
RPA3P35244 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.29■□□□□ 0.2
RPA3P35244 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RPA3P35244 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RPA3P35244 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RPA3P35244 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RPA3P35244 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
RPA3P35244 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RPA3P35244 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RPA3P35244 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.29■□□□□ 0.2
RPA3P35244 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RPA3P35244 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.29■□□□□ 0.2
RPA3P35244 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
RPA3P35244 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.29■□□□□ 0.2
RPA3P35244 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RPA3P35244 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.29■□□□□ 0.2
RPA3P35244 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RPA3P35244 KRT18P3-201ENST00000451602 1288 ntBASIC16.29■□□□□ 0.2
RPA3P35244 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RPA3P35244 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.29■□□□□ 0.2
RPA3P35244 KRT18P58-201ENST00000527480 1120 ntBASIC16.29■□□□□ 0.2
RPA3P35244 AC096734.2-201ENST00000562054 433 ntBASIC16.29■□□□□ 0.2
RPA3P35244 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.29■□□□□ 0.2
RPA3P35244 FAM197Y3-203ENST00000618346 717 ntBASIC16.29■□□□□ 0.2
RPA3P35244 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RPA3P35244 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RPA3P35244 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.29■□□□□ 0.2
RPA3P35244 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
RPA3P35244 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RPA3P35244 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
RPA3P35244 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RPA3P35244 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.29■□□□□ 0.2
RPA3P35244 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RPA3P35244 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RPA3P35244 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RPA3P35244 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
RPA3P35244 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RPA3P35244 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RPA3P35244 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RPA3P35244 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
RPA3P35244 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RPA3P35244 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.28■□□□□ 0.2
RPA3P35244 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
RPA3P35244 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RPA3P35244 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
RPA3P35244 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RPA3P35244 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RPA3P35244 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RPA3P35244 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
RPA3P35244 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RPA3P35244 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RPA3P35244 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.28■□□□□ 0.2
RPA3P35244 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RPA3P35244 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RPA3P35244 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RPA3P35244 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.28■□□□□ 0.2
RPA3P35244 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
RPA3P35244 HCG4-201ENST00000418983 998 ntBASIC16.28■□□□□ 0.2
RPA3P35244 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.28■□□□□ 0.2
RPA3P35244 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
RPA3P35244 MAL2-202ENST00000531508 892 ntTSL 3 BASIC16.28■□□□□ 0.2
RPA3P35244 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.28■□□□□ 0.2
RPA3P35244 AC018845.2-201ENST00000568326 409 ntBASIC16.28■□□□□ 0.2
RPA3P35244 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RPA3P35244 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
RPA3P35244 AC007064.4-201ENST00000637740 555 ntBASIC16.28■□□□□ 0.2
RPA3P35244 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.28■□□□□ 0.2
RPA3P35244 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.28■□□□□ 0.2
RPA3P35244 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.28■□□□□ 0.2
RPA3P35244 AC087481.3-201ENST00000602886 1894 ntBASIC16.28■□□□□ 0.2
RPA3P35244 U82695.1-201ENST00000635752 1889 ntBASIC16.28■□□□□ 0.2
RPA3P35244 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
RPA3P35244 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RPA3P35244 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
RPA3P35244 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
RPA3P35244 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC16.28■□□□□ 0.2
RPA3P35244 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RPA3P35244 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RPA3P35244 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms