Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 AC004790.1-201ENST00000612686 536 ntBASIC16.9■□□□□ 0.3
BDNFP23560 AC005702.4-201ENST00000618393 416 ntBASIC16.9■□□□□ 0.3
BDNFP23560 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.9■□□□□ 0.3
BDNFP23560 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.9■□□□□ 0.3
BDNFP23560 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.9■□□□□ 0.3
BDNFP23560 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
BDNFP23560 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.9■□□□□ 0.3
BDNFP23560 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
BDNFP23560 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.89■□□□□ 0.3
BDNFP23560 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
BDNFP23560 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.89■□□□□ 0.29
BDNFP23560 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
BDNFP23560 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.89■□□□□ 0.29
BDNFP23560 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.89■□□□□ 0.29
BDNFP23560 PIN1P1-201ENST00000412108 996 ntBASIC16.89■□□□□ 0.29
BDNFP23560 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.89■□□□□ 0.29
BDNFP23560 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.89■□□□□ 0.29
BDNFP23560 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.89■□□□□ 0.29
BDNFP23560 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC16.89■□□□□ 0.29
BDNFP23560 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC16.89■□□□□ 0.29
BDNFP23560 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.89■□□□□ 0.29
BDNFP23560 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.89■□□□□ 0.29
BDNFP23560 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.89■□□□□ 0.29
BDNFP23560 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.89■□□□□ 0.29
BDNFP23560 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.89■□□□□ 0.29
BDNFP23560 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.89■□□□□ 0.29
BDNFP23560 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
BDNFP23560 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.89■□□□□ 0.29
BDNFP23560 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.89■□□□□ 0.29
BDNFP23560 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.89■□□□□ 0.29
BDNFP23560 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
BDNFP23560 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.89■□□□□ 0.29
BDNFP23560 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
BDNFP23560 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
BDNFP23560 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
BDNFP23560 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.89■□□□□ 0.29
BDNFP23560 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
BDNFP23560 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.88■□□□□ 0.29
BDNFP23560 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
BDNFP23560 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.88■□□□□ 0.29
BDNFP23560 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.88■□□□□ 0.29
BDNFP23560 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.88■□□□□ 0.29
BDNFP23560 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.88■□□□□ 0.29
BDNFP23560 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
BDNFP23560 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
BDNFP23560 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
BDNFP23560 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
BDNFP23560 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC16.88■□□□□ 0.29
BDNFP23560 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC16.88■□□□□ 0.29
BDNFP23560 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.88■□□□□ 0.29
BDNFP23560 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
BDNFP23560 AC190387.1-201ENST00000551683 408 ntBASIC16.88■□□□□ 0.29
BDNFP23560 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
BDNFP23560 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.88■□□□□ 0.29
BDNFP23560 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.88■□□□□ 0.29
BDNFP23560 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
BDNFP23560 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
BDNFP23560 PCDHB19P-201ENST00000570871 2371 ntBASIC16.88■□□□□ 0.29
BDNFP23560 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
BDNFP23560 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
BDNFP23560 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
BDNFP23560 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
BDNFP23560 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.88■□□□□ 0.29
BDNFP23560 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
BDNFP23560 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.88■□□□□ 0.29
BDNFP23560 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
BDNFP23560 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
BDNFP23560 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
BDNFP23560 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.88■□□□□ 0.29
BDNFP23560 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BDNFP23560 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BDNFP23560 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.87■□□□□ 0.29
BDNFP23560 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BDNFP23560 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
BDNFP23560 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms