Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC18.92■□□□□ 0.62
HMGB1P09429 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
HMGB1P09429 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
HMGB1P09429 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
HMGB1P09429 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC18.92■□□□□ 0.62
HMGB1P09429 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.92■□□□□ 0.62
HMGB1P09429 AC004967.1-201ENST00000453589 447 ntBASIC18.92■□□□□ 0.62
HMGB1P09429 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
HMGB1P09429 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC18.92■□□□□ 0.62
HMGB1P09429 AL512356.2-201ENST00000546955 174 ntBASIC18.92■□□□□ 0.62
HMGB1P09429 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC18.92■□□□□ 0.62
HMGB1P09429 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC18.92■□□□□ 0.62
HMGB1P09429 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
HMGB1P09429 FLII-221ENST00000578558 2377 ntTSL 5 BASIC18.92■□□□□ 0.62
HMGB1P09429 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC18.92■□□□□ 0.62
HMGB1P09429 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.92■□□□□ 0.62
HMGB1P09429 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB1P09429 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB1P09429 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC18.91■□□□□ 0.62
HMGB1P09429 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB1P09429 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
HMGB1P09429 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC18.91■□□□□ 0.62
HMGB1P09429 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB1P09429 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB1P09429 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB1P09429 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB1P09429 OVCH1-AS1-204ENST00000641955 5529 ntBASIC18.91■□□□□ 0.62
HMGB1P09429 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB1P09429 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB1P09429 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB1P09429 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB1P09429 RAC2-202ENST00000401529 569 ntTSL 4 BASIC18.91■□□□□ 0.62
HMGB1P09429 SPDYE7P-202ENST00000420373 878 ntBASIC18.91■□□□□ 0.62
HMGB1P09429 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.91■□□□□ 0.62
HMGB1P09429 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.91■□□□□ 0.62
HMGB1P09429 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.91■□□□□ 0.62
HMGB1P09429 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC18.91■□□□□ 0.62
HMGB1P09429 SNHG9-202ENST00000564014 471 ntBASIC18.91■□□□□ 0.62
HMGB1P09429 LITAF-210ENST00000571976 548 ntTSL 2 BASIC18.91■□□□□ 0.62
HMGB1P09429 LITAF-214ENST00000574703 486 ntTSL 2 BASIC18.91■□□□□ 0.62
HMGB1P09429 AL450472.2-201ENST00000603663 1156 ntBASIC18.91■□□□□ 0.62
HMGB1P09429 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB1P09429 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB1P09429 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
HMGB1P09429 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB1P09429 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB1P09429 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
HMGB1P09429 WARS-232ENST00000556645 2508 ntTSL 5 BASIC18.91■□□□□ 0.62
HMGB1P09429 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB1P09429 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB1P09429 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
HMGB1P09429 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB1P09429 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB1P09429 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB1P09429 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
HMGB1P09429 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB1P09429 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
HMGB1P09429 RBM39-205ENST00000397370 612 ntTSL 2 BASIC18.9■□□□□ 0.62
HMGB1P09429 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.9■□□□□ 0.62
HMGB1P09429 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB1P09429 ELP6-209ENST00000446787 894 ntTSL 3 BASIC18.9■□□□□ 0.62
HMGB1P09429 PHKG1P2-201ENST00000457537 863 ntBASIC18.9■□□□□ 0.62
HMGB1P09429 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.9■□□□□ 0.62
HMGB1P09429 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.9■□□□□ 0.62
HMGB1P09429 BANF1P1-201ENST00000553684 263 ntBASIC18.9■□□□□ 0.62
HMGB1P09429 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC18.9■□□□□ 0.62
HMGB1P09429 AC003101.2-201ENST00000612557 442 ntBASIC18.9■□□□□ 0.62
HMGB1P09429 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC18.9■□□□□ 0.62
HMGB1P09429 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB1P09429 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB1P09429 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB1P09429 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC18.9■□□□□ 0.62
HMGB1P09429 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB1P09429 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC18.9■□□□□ 0.62
HMGB1P09429 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB1P09429 GOLGA6L17P-202ENST00000614358 1398 ntBASIC18.9■□□□□ 0.62
HMGB1P09429 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC18.9■□□□□ 0.62
HMGB1P09429 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB1P09429 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB1P09429 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms