Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC13.75□□□□□ -0.21
SDCBPO00560 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
SDCBPO00560 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC13.75□□□□□ -0.21
SDCBPO00560 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC13.75□□□□□ -0.21
SDCBPO00560 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC13.75□□□□□ -0.21
SDCBPO00560 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC13.75□□□□□ -0.21
SDCBPO00560 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC13.75□□□□□ -0.21
SDCBPO00560 AL662844.1-201ENST00000546340 181 ntBASIC13.75□□□□□ -0.21
SDCBPO00560 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC13.75□□□□□ -0.21
SDCBPO00560 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC13.75□□□□□ -0.21
SDCBPO00560 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC13.75□□□□□ -0.21
SDCBPO00560 AC104692.2-201ENST00000603054 253 ntBASIC13.75□□□□□ -0.21
SDCBPO00560 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC13.75□□□□□ -0.21
SDCBPO00560 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC13.75□□□□□ -0.21
SDCBPO00560 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 TPO-203ENST00000346956 2923 ntTSL 5 BASIC13.75□□□□□ -0.21
SDCBPO00560 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC13.75□□□□□ -0.21
SDCBPO00560 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC13.75□□□□□ -0.21
SDCBPO00560 AL592424.1-201ENST00000563624 1536 ntBASIC13.74□□□□□ -0.21
SDCBPO00560 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
SDCBPO00560 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 DKFZP434H168-201ENST00000567381 1905 ntBASIC13.74□□□□□ -0.21
SDCBPO00560 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC13.74□□□□□ -0.21
SDCBPO00560 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
SDCBPO00560 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC13.74□□□□□ -0.21
SDCBPO00560 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC13.74□□□□□ -0.21
SDCBPO00560 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
SDCBPO00560 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC13.74□□□□□ -0.21
SDCBPO00560 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 MRPL3P1-201ENST00000400109 1033 ntBASIC13.74□□□□□ -0.21
SDCBPO00560 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC13.74□□□□□ -0.21
SDCBPO00560 PRSS29P-201ENST00000440800 595 ntBASIC13.74□□□□□ -0.21
SDCBPO00560 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC13.74□□□□□ -0.21
SDCBPO00560 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
SDCBPO00560 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC13.74□□□□□ -0.21
SDCBPO00560 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC13.74□□□□□ -0.21
SDCBPO00560 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC13.74□□□□□ -0.21
SDCBPO00560 AC116407.3-201ENST00000623905 1129 ntBASIC13.74□□□□□ -0.21
SDCBPO00560 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC13.74□□□□□ -0.21
SDCBPO00560 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC13.74□□□□□ -0.21
SDCBPO00560 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.74□□□□□ -0.21
SDCBPO00560 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SDCBPO00560 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SDCBPO00560 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SDCBPO00560 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SDCBPO00560 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SDCBPO00560 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.73□□□□□ -0.21
SDCBPO00560 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC13.73□□□□□ -0.21
SDCBPO00560 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SDCBPO00560 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC13.73□□□□□ -0.21
SDCBPO00560 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
SDCBPO00560 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SDCBPO00560 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SDCBPO00560 SLC9A3P2-201ENST00000447821 2021 ntBASIC13.73□□□□□ -0.21
SDCBPO00560 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC13.73□□□□□ -0.21
SDCBPO00560 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC13.73□□□□□ -0.21
SDCBPO00560 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
SDCBPO00560 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
SDCBPO00560 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC13.73□□□□□ -0.21
SDCBPO00560 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC13.73□□□□□ -0.21
SDCBPO00560 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC13.73□□□□□ -0.21
SDCBPO00560 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC13.73□□□□□ -0.21
SDCBPO00560 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SDCBPO00560 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SDCBPO00560 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SDCBPO00560 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC13.73□□□□□ -0.21
SDCBPO00560 CSF3-203ENST00000394148 622 ntTSL 3 BASIC13.73□□□□□ -0.21
SDCBPO00560 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SDCBPO00560 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC13.73□□□□□ -0.21
SDCBPO00560 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC13.73□□□□□ -0.21
SDCBPO00560 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
SDCBPO00560 CXCL1P1-201ENST00000502804 216 ntBASIC13.73□□□□□ -0.21
SDCBPO00560 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC13.73□□□□□ -0.21
SDCBPO00560 MMP17-203ENST00000535004 719 ntTSL 3 BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms