Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 AMT-232ENST00000636199 1546 ntTSL 5 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 USB1-202ENST00000423271 1217 ntTSL 2 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 EEF1DP4-201ENST00000446006 880 ntBASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 FAM86LP-201ENST00000478302 853 ntBASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 AC079316.1-201ENST00000548397 411 ntBASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 AC006538.1-201ENST00000567905 1585 ntBASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.39■□□□□ 0.05
PCDHGA1Q9Y5H4 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 AC005622.1-201ENST00000636801 1703 ntBASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 HAUS4P1-201ENST00000406739 1145 ntBASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 AL355864.2-201ENST00000447420 863 ntBASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 AC068587.3-201ENST00000526613 355 ntBASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 USB1-203ENST00000539737 1212 ntTSL 2 BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 AC068587.10-201ENST00000641210 219 ntBASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 FER1L4-210ENST00000615531 5998 ntBASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDHGA1Q9Y5H4 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PCDHGA1Q9Y5H4 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms