Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
NUP88Q99567 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP88Q99567 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP88Q99567 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC18.81■□□□□ 0.6
NUP88Q99567 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP88Q99567 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP88Q99567 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC18.8■□□□□ 0.6
NUP88Q99567 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NUP88Q99567 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP88Q99567 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC18.8■□□□□ 0.6
NUP88Q99567 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.8■□□□□ 0.6
NUP88Q99567 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NUP88Q99567 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP88Q99567 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC18.8■□□□□ 0.6
NUP88Q99567 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC18.8■□□□□ 0.6
NUP88Q99567 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NUP88Q99567 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP88Q99567 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP88Q99567 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
NUP88Q99567 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP88Q99567 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC18.8■□□□□ 0.6
NUP88Q99567 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP88Q99567 METTL26-204ENST00000397665 558 ntTSL 2 BASIC18.8■□□□□ 0.6
NUP88Q99567 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
NUP88Q99567 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC18.8■□□□□ 0.6
NUP88Q99567 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC18.8■□□□□ 0.6
NUP88Q99567 MIR4321-201ENST00000592276 80 ntBASIC18.8■□□□□ 0.6
NUP88Q99567 TEX48-202ENST00000612244 662 ntTSL 3 BASIC18.8■□□□□ 0.6
NUP88Q99567 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC18.8■□□□□ 0.6
NUP88Q99567 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC18.8■□□□□ 0.6
NUP88Q99567 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP88Q99567 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
NUP88Q99567 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP88Q99567 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP88Q99567 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
NUP88Q99567 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NUP88Q99567 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
NUP88Q99567 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NUP88Q99567 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP88Q99567 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP88Q99567 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.8■□□□□ 0.6
NUP88Q99567 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NUP88Q99567 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC18.79■□□□□ 0.6
NUP88Q99567 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP88Q99567 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
NUP88Q99567 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NUP88Q99567 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.79■□□□□ 0.6
NUP88Q99567 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC18.79■□□□□ 0.6
NUP88Q99567 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP88Q99567 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP88Q99567 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC18.79■□□□□ 0.6
NUP88Q99567 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
NUP88Q99567 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.79■□□□□ 0.6
NUP88Q99567 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NUP88Q99567 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC18.79■□□□□ 0.6
NUP88Q99567 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
NUP88Q99567 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NUP88Q99567 RASL12-203ENST00000434605 982 ntTSL 2 BASIC18.79■□□□□ 0.6
NUP88Q99567 PAM16-215ENST00000577031 548 ntTSL 4 BASIC18.79■□□□□ 0.6
NUP88Q99567 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP88Q99567 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC18.79■□□□□ 0.6
NUP88Q99567 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP88Q99567 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
NUP88Q99567 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
NUP88Q99567 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP88Q99567 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP88Q99567 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP88Q99567 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
NUP88Q99567 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
NUP88Q99567 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC18.79■□□□□ 0.6
NUP88Q99567 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
NUP88Q99567 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP88Q99567 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC18.79■□□□□ 0.6
NUP88Q99567 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP88Q99567 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NUP88Q99567 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
NUP88Q99567 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP88Q99567 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
NUP88Q99567 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NUP88Q99567 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC18.78■□□□□ 0.6
NUP88Q99567 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP88Q99567 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC18.78■□□□□ 0.6
NUP88Q99567 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.78■□□□□ 0.6
NUP88Q99567 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.78■□□□□ 0.6
NUP88Q99567 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NUP88Q99567 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP88Q99567 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
NUP88Q99567 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
NUP88Q99567 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NUP88Q99567 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.78■□□□□ 0.6
NUP88Q99567 CYP4F24P-201ENST00000586049 1580 ntBASIC18.78■□□□□ 0.6
NUP88Q99567 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.78■□□□□ 0.6
NUP88Q99567 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP88Q99567 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NUP88Q99567 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP88Q99567 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NUP88Q99567 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC18.78■□□□□ 0.6
NUP88Q99567 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
NUP88Q99567 RAD18-204ENST00000418463 563 ntTSL 4 BASIC18.78■□□□□ 0.6
NUP88Q99567 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms