Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 AC003101.2-201ENST00000612557 442 ntBASIC12.44□□□□□ -0.42
CCDC140Q96MF4 AC007967.4-201ENST00000614700 386 ntBASIC12.44□□□□□ -0.42
CCDC140Q96MF4 AP001059.3-201ENST00000619053 235 ntBASIC12.44□□□□□ -0.42
CCDC140Q96MF4 AC079781.4-201ENST00000641908 219 ntBASIC12.44□□□□□ -0.42
CCDC140Q96MF4 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 LRRFIP1P1-201ENST00000498774 2246 ntBASIC12.43□□□□□ -0.42
CCDC140Q96MF4 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 AC105917.1-201ENST00000506637 2539 ntBASIC12.43□□□□□ -0.42
CCDC140Q96MF4 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 DAD1-205ENST00000543337 501 ntTSL 3 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 AC105021.1-202ENST00000570572 669 ntBASIC12.43□□□□□ -0.42
CCDC140Q96MF4 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 LINC00628-201ENST00000628516 1289 ntBASIC12.43□□□□□ -0.42
CCDC140Q96MF4 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CCDC140Q96MF4 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
CCDC140Q96MF4 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms