Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC42Q96M95 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC42Q96M95 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC42Q96M95 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC42Q96M95 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC42Q96M95 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC42Q96M95 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC42Q96M95 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC42Q96M95 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC42Q96M95 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC42Q96M95 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC42Q96M95 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC42Q96M95 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CCDC42Q96M95 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC42Q96M95 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC42Q96M95 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CCDC42Q96M95 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC42Q96M95 API5-202ENST00000420461 2009 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC42Q96M95 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC42Q96M95 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC42Q96M95 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC42Q96M95 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC42Q96M95 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.39■□□□□ 0.37
CCDC42Q96M95 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC42Q96M95 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
CCDC42Q96M95 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC42Q96M95 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC42Q96M95 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC42Q96M95 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC42Q96M95 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC42Q96M95 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC42Q96M95 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC42Q96M95 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC42Q96M95 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC42Q96M95 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CCDC42Q96M95 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC42Q96M95 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC42Q96M95 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC42Q96M95 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC42Q96M95 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC42Q96M95 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC42Q96M95 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
CCDC42Q96M95 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CCDC42Q96M95 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC42Q96M95 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC42Q96M95 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC42Q96M95 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC42Q96M95 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC42Q96M95 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CCDC42Q96M95 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC42Q96M95 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CCDC42Q96M95 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC42Q96M95 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC42Q96M95 AC092474.2-201ENST00000424288 719 ntBASIC17.38■□□□□ 0.37
CCDC42Q96M95 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.38■□□□□ 0.37
CCDC42Q96M95 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC42Q96M95 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CCDC42Q96M95 AL078644.1-201ENST00000609881 752 ntBASIC17.38■□□□□ 0.37
CCDC42Q96M95 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC42Q96M95 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CCDC42Q96M95 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC17.38■□□□□ 0.37
CCDC42Q96M95 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
CCDC42Q96M95 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
CCDC42Q96M95 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC42Q96M95 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC42Q96M95 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
CCDC42Q96M95 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC42Q96M95 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC42Q96M95 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC42Q96M95 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC42Q96M95 AP001282.1-201ENST00000531301 1499 ntBASIC17.37■□□□□ 0.37
CCDC42Q96M95 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC42Q96M95 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC42Q96M95 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 AL589702.1-201ENST00000641229 1509 ntBASIC17.37■□□□□ 0.37
CCDC42Q96M95 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC42Q96M95 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC42Q96M95 AC138035.3-201ENST00000622706 2791 ntBASIC17.37■□□□□ 0.37
CCDC42Q96M95 AL161772.1-201ENST00000610494 4412 ntBASIC17.37■□□□□ 0.37
CCDC42Q96M95 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms