Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
TTC28Q96AY4 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TTC28Q96AY4 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TTC28Q96AY4 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC15.93■□□□□ 0.14
TTC28Q96AY4 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.93■□□□□ 0.14
TTC28Q96AY4 AC136604.1-201ENST00000418535 575 ntBASIC15.93■□□□□ 0.14
TTC28Q96AY4 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC15.93■□□□□ 0.14
TTC28Q96AY4 AC244197.1-201ENST00000456494 951 ntBASIC15.93■□□□□ 0.14
TTC28Q96AY4 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC15.93■□□□□ 0.14
TTC28Q96AY4 AC100850.1-201ENST00000506768 649 ntBASIC15.93■□□□□ 0.14
TTC28Q96AY4 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC15.93■□□□□ 0.14
TTC28Q96AY4 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
TTC28Q96AY4 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC15.93■□□□□ 0.14
TTC28Q96AY4 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
TTC28Q96AY4 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TTC28Q96AY4 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC15.93■□□□□ 0.14
TTC28Q96AY4 AC009053.2-201ENST00000563701 2365 ntBASIC15.93■□□□□ 0.14
TTC28Q96AY4 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TTC28Q96AY4 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TTC28Q96AY4 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.93■□□□□ 0.14
TTC28Q96AY4 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TTC28Q96AY4 AC018463.1-201ENST00000456674 917 ntBASIC15.93■□□□□ 0.14
TTC28Q96AY4 AC024293.1-201ENST00000467930 498 ntBASIC15.93■□□□□ 0.14
TTC28Q96AY4 PMEL-214ENST00000550447 901 ntTSL 3 BASIC15.93■□□□□ 0.14
TTC28Q96AY4 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC15.93■□□□□ 0.14
TTC28Q96AY4 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC15.93■□□□□ 0.14
TTC28Q96AY4 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
TTC28Q96AY4 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TTC28Q96AY4 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TTC28Q96AY4 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
TTC28Q96AY4 AC133963.1-201ENST00000504166 1679 ntBASIC15.92■□□□□ 0.14
TTC28Q96AY4 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.92■□□□□ 0.14
TTC28Q96AY4 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TTC28Q96AY4 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TTC28Q96AY4 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
TTC28Q96AY4 LYPLA2P1-203ENST00000447689 696 ntBASIC15.92■□□□□ 0.14
TTC28Q96AY4 AC005740.2-201ENST00000511085 419 ntBASIC15.92■□□□□ 0.14
TTC28Q96AY4 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC15.92■□□□□ 0.14
TTC28Q96AY4 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
TTC28Q96AY4 AC011247.3-201ENST00000603297 438 ntBASIC15.92■□□□□ 0.14
TTC28Q96AY4 AC005632.3-201ENST00000605544 308 ntBASIC15.92■□□□□ 0.14
TTC28Q96AY4 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC15.92■□□□□ 0.14
TTC28Q96AY4 CR392039.1-201ENST00000623217 204 ntBASIC15.92■□□□□ 0.14
TTC28Q96AY4 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TTC28Q96AY4 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC15.92■□□□□ 0.14
TTC28Q96AY4 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC15.92■□□□□ 0.14
TTC28Q96AY4 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TTC28Q96AY4 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TTC28Q96AY4 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
TTC28Q96AY4 FAM90A2P-201ENST00000511144 1395 ntBASIC15.92■□□□□ 0.14
TTC28Q96AY4 FAM90A25P-201ENST00000528404 1395 ntBASIC15.92■□□□□ 0.14
TTC28Q96AY4 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
TTC28Q96AY4 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
TTC28Q96AY4 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC15.92■□□□□ 0.14
TTC28Q96AY4 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TTC28Q96AY4 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TTC28Q96AY4 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
TTC28Q96AY4 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TTC28Q96AY4 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC15.92■□□□□ 0.14
TTC28Q96AY4 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC15.92■□□□□ 0.14
TTC28Q96AY4 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TTC28Q96AY4 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TTC28Q96AY4 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TTC28Q96AY4 GCSHP3-201ENST00000431120 391 ntBASIC15.92■□□□□ 0.14
TTC28Q96AY4 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TTC28Q96AY4 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
TTC28Q96AY4 GAPDHP40-201ENST00000505218 1006 ntBASIC15.92■□□□□ 0.14
TTC28Q96AY4 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TTC28Q96AY4 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC15.92■□□□□ 0.14
TTC28Q96AY4 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC15.92■□□□□ 0.14
TTC28Q96AY4 AC073911.3-201ENST00000624401 631 ntBASIC15.92■□□□□ 0.14
TTC28Q96AY4 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC15.92■□□□□ 0.14
TTC28Q96AY4 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC15.92■□□□□ 0.14
TTC28Q96AY4 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TTC28Q96AY4 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC15.92■□□□□ 0.14
TTC28Q96AY4 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TTC28Q96AY4 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TTC28Q96AY4 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TTC28Q96AY4 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TTC28Q96AY4 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
TTC28Q96AY4 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TTC28Q96AY4 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 AP000356.3-201ENST00000382243 753 ntBASIC15.91■□□□□ 0.14
TTC28Q96AY4 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TTC28Q96AY4 HPGD-203ENST00000422112 805 ntTSL 2 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TTC28Q96AY4 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 AC243562.2-201ENST00000561247 970 ntBASIC15.91■□□□□ 0.14
TTC28Q96AY4 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TTC28Q96AY4 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TTC28Q96AY4 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms