Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC144BQ3MJ40 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC144BQ3MJ40 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC18.67■□□□□ 0.58
CCDC144BQ3MJ40 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC144BQ3MJ40 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CCDC144BQ3MJ40 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC144BQ3MJ40 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC144BQ3MJ40 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC144BQ3MJ40 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC144BQ3MJ40 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CCDC144BQ3MJ40 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
CCDC144BQ3MJ40 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 FAM220BP-201ENST00000377689 816 ntBASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 AL353705.2-201ENST00000428243 662 ntBASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 AC009477.1-201ENST00000452936 217 ntBASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 TUBB8P12-201ENST00000308911 1335 ntBASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 TUBB7P-202ENST00000428444 1305 ntBASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 TUBB8P7-204ENST00000567960 1332 ntBASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC144BQ3MJ40 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 NME2P1-201ENST00000426182 414 ntBASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 MTND6P24-201ENST00000440466 518 ntBASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 RN7SL692P-201ENST00000464677 288 ntBASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 REEP4-207ENST00000523293 913 ntTSL 3 BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 AC009407.1-201ENST00000568958 598 ntBASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 TEX28P1-201ENST00000613479 1221 ntBASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 TEX28P2-201ENST00000617764 1221 ntBASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC144BQ3MJ40 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.64■□□□□ 0.58
CCDC144BQ3MJ40 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC18.64■□□□□ 0.58
CCDC144BQ3MJ40 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CCDC144BQ3MJ40 SUPT20HL2-201ENST00000486479 2409 ntBASIC18.64■□□□□ 0.58
CCDC144BQ3MJ40 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
CCDC144BQ3MJ40 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
CCDC144BQ3MJ40 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CCDC144BQ3MJ40 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC144BQ3MJ40 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC18.64■□□□□ 0.57
CCDC144BQ3MJ40 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms