Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC18.15■□□□□ 0.5
CCNA1P78396 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCNA1P78396 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CCNA1P78396 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCNA1P78396 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCNA1P78396 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCNA1P78396 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.15■□□□□ 0.5
CCNA1P78396 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.15■□□□□ 0.5
CCNA1P78396 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CCNA1P78396 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.15■□□□□ 0.5
CCNA1P78396 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.15■□□□□ 0.5
CCNA1P78396 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCNA1P78396 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CCNA1P78396 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CCNA1P78396 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CCNA1P78396 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CCNA1P78396 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.5
CCNA1P78396 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCNA1P78396 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC18.14■□□□□ 0.49
CCNA1P78396 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCNA1P78396 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCNA1P78396 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCNA1P78396 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
CCNA1P78396 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC18.14■□□□□ 0.49
CCNA1P78396 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCNA1P78396 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC18.14■□□□□ 0.49
CCNA1P78396 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCNA1P78396 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCNA1P78396 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CCNA1P78396 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC18.14■□□□□ 0.49
CCNA1P78396 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC18.14■□□□□ 0.49
CCNA1P78396 KRT18P64-201ENST00000434946 1219 ntBASIC18.14■□□□□ 0.49
CCNA1P78396 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC18.14■□□□□ 0.49
CCNA1P78396 VDAC1P7-201ENST00000462417 847 ntBASIC18.14■□□□□ 0.49
CCNA1P78396 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCNA1P78396 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
CCNA1P78396 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC18.14■□□□□ 0.49
CCNA1P78396 AL450472.2-201ENST00000603663 1156 ntBASIC18.14■□□□□ 0.49
CCNA1P78396 AL606495.2-201ENST00000605867 535 ntBASIC18.14■□□□□ 0.49
CCNA1P78396 MIR6787-201ENST00000616675 61 ntBASIC18.14■□□□□ 0.49
CCNA1P78396 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCNA1P78396 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCNA1P78396 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCNA1P78396 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCNA1P78396 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCNA1P78396 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCNA1P78396 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.14■□□□□ 0.49
CCNA1P78396 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCNA1P78396 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC18.14■□□□□ 0.49
CCNA1P78396 KRT8P44-201ENST00000441609 1350 ntBASIC18.14■□□□□ 0.49
CCNA1P78396 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCNA1P78396 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCNA1P78396 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC18.14■□□□□ 0.49
CCNA1P78396 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CCNA1P78396 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCNA1P78396 REXO1L8P-201ENST00000604378 1897 ntBASIC18.14■□□□□ 0.49
CCNA1P78396 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CCNA1P78396 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCNA1P78396 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC18.13■□□□□ 0.49
CCNA1P78396 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCNA1P78396 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CCNA1P78396 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CCNA1P78396 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC18.13■□□□□ 0.49
CCNA1P78396 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCNA1P78396 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
CCNA1P78396 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCNA1P78396 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCNA1P78396 AL645608.8-201ENST00000606034 2086 ntBASIC18.13■□□□□ 0.49
CCNA1P78396 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCNA1P78396 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CCNA1P78396 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCNA1P78396 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCNA1P78396 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC18.13■□□□□ 0.49
CCNA1P78396 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCNA1P78396 ZBTB12BP-201ENST00000314232 1122 ntBASIC18.13■□□□□ 0.49
CCNA1P78396 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC18.13■□□□□ 0.49
CCNA1P78396 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCNA1P78396 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCNA1P78396 AC092933.1-201ENST00000393644 945 ntBASIC18.13■□□□□ 0.49
CCNA1P78396 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CCNA1P78396 HAUS4P1-201ENST00000406739 1145 ntBASIC18.13■□□□□ 0.49
CCNA1P78396 AC136604.1-201ENST00000418535 575 ntBASIC18.13■□□□□ 0.49
CCNA1P78396 AC016694.1-201ENST00000434179 700 ntBASIC18.13■□□□□ 0.49
CCNA1P78396 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC18.13■□□□□ 0.49
CCNA1P78396 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC18.13■□□□□ 0.49
CCNA1P78396 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC18.13■□□□□ 0.49
CCNA1P78396 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC18.13■□□□□ 0.49
CCNA1P78396 METTL26-214ENST00000614890 801 ntTSL 3 BASIC18.13■□□□□ 0.49
CCNA1P78396 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCNA1P78396 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCNA1P78396 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC18.13■□□□□ 0.49
CCNA1P78396 RNF216P1-203ENST00000404404 2427 ntBASIC18.13■□□□□ 0.49
CCNA1P78396 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC18.13■□□□□ 0.49
CCNA1P78396 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC18.13■□□□□ 0.49
CCNA1P78396 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC18.13■□□□□ 0.49
CCNA1P78396 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CCNA1P78396 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCNA1P78396 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCNA1P78396 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCNA1P78396 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms