Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
EPHB3P54753 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.72■□□□□ 0.27
EPHB3P54753 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
EPHB3P54753 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
EPHB3P54753 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
EPHB3P54753 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
EPHB3P54753 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
EPHB3P54753 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
EPHB3P54753 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
EPHB3P54753 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.71■□□□□ 0.27
EPHB3P54753 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
EPHB3P54753 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
EPHB3P54753 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
EPHB3P54753 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
EPHB3P54753 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.71■□□□□ 0.27
EPHB3P54753 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
EPHB3P54753 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC16.71■□□□□ 0.27
EPHB3P54753 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
EPHB3P54753 PHKG1P2-201ENST00000457537 863 ntBASIC16.71■□□□□ 0.27
EPHB3P54753 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC16.71■□□□□ 0.27
EPHB3P54753 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.71■□□□□ 0.27
EPHB3P54753 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.71■□□□□ 0.27
EPHB3P54753 AC092552.1-201ENST00000547243 906 ntBASIC16.71■□□□□ 0.27
EPHB3P54753 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.71■□□□□ 0.27
EPHB3P54753 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.71■□□□□ 0.27
EPHB3P54753 AL033527.5-201ENST00000641382 801 ntBASIC16.71■□□□□ 0.27
EPHB3P54753 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
EPHB3P54753 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
EPHB3P54753 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
EPHB3P54753 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
EPHB3P54753 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
EPHB3P54753 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.71■□□□□ 0.27
EPHB3P54753 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.71■□□□□ 0.27
EPHB3P54753 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.26
EPHB3P54753 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
EPHB3P54753 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.26
EPHB3P54753 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
EPHB3P54753 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.7■□□□□ 0.26
EPHB3P54753 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.7■□□□□ 0.26
EPHB3P54753 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.7■□□□□ 0.26
EPHB3P54753 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.7■□□□□ 0.26
EPHB3P54753 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
EPHB3P54753 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.7■□□□□ 0.26
EPHB3P54753 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.7■□□□□ 0.26
EPHB3P54753 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
EPHB3P54753 MXI1-205ENST00000393134 889 ntTSL 2 BASIC16.7■□□□□ 0.26
EPHB3P54753 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
EPHB3P54753 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.7■□□□□ 0.26
EPHB3P54753 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.7■□□□□ 0.26
EPHB3P54753 AC007389.4-201ENST00000454674 793 ntBASIC16.7■□□□□ 0.26
EPHB3P54753 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC16.7■□□□□ 0.26
EPHB3P54753 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC16.7■□□□□ 0.26
EPHB3P54753 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.7■□□□□ 0.26
EPHB3P54753 HILS1-202ENST00000545329 423 ntBASIC16.7■□□□□ 0.26
EPHB3P54753 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.7■□□□□ 0.26
EPHB3P54753 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
EPHB3P54753 MIR6752-201ENST00000618442 71 ntBASIC16.7■□□□□ 0.26
EPHB3P54753 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.7■□□□□ 0.26
EPHB3P54753 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.7■□□□□ 0.26
EPHB3P54753 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
EPHB3P54753 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
EPHB3P54753 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.7■□□□□ 0.26
EPHB3P54753 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 AC011676.5-201ENST00000624864 2660 ntBASIC16.7■□□□□ 0.26
EPHB3P54753 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
EPHB3P54753 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
EPHB3P54753 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
EPHB3P54753 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.69■□□□□ 0.26
EPHB3P54753 AC134407.2-201ENST00000625089 1978 ntBASIC16.69■□□□□ 0.26
EPHB3P54753 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
EPHB3P54753 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
EPHB3P54753 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.69■□□□□ 0.26
EPHB3P54753 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.69■□□□□ 0.26
EPHB3P54753 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.69■□□□□ 0.26
EPHB3P54753 AGGF1P2-201ENST00000426656 2106 ntBASIC16.69■□□□□ 0.26
EPHB3P54753 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.69■□□□□ 0.26
EPHB3P54753 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
EPHB3P54753 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
EPHB3P54753 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms