Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
MSH6P52701 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC21.93■■□□□ 1.1
MSH6P52701 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH6P52701 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC21.92■■□□□ 1.1
MSH6P52701 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH6P52701 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC21.92■■□□□ 1.1
MSH6P52701 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH6P52701 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC21.92■■□□□ 1.1
MSH6P52701 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
MSH6P52701 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH6P52701 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC21.92■■□□□ 1.1
MSH6P52701 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC21.92■■□□□ 1.1
MSH6P52701 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
MSH6P52701 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
MSH6P52701 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH6P52701 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
MSH6P52701 CNN2P10-201ENST00000443067 918 ntBASIC21.92■■□□□ 1.1
MSH6P52701 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
MSH6P52701 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
MSH6P52701 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC21.92■■□□□ 1.1
MSH6P52701 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH6P52701 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC21.92■■□□□ 1.1
MSH6P52701 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH6P52701 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
MSH6P52701 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH6P52701 BNIP3P1-202ENST00000550043 1585 ntBASIC21.92■■□□□ 1.1
MSH6P52701 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
MSH6P52701 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH6P52701 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC21.92■■□□□ 1.1
MSH6P52701 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
MSH6P52701 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
MSH6P52701 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC21.92■■□□□ 1.1
MSH6P52701 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
MSH6P52701 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
MSH6P52701 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH6P52701 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH6P52701 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH6P52701 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
MSH6P52701 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
MSH6P52701 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
MSH6P52701 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSH6P52701 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSH6P52701 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
MSH6P52701 SDCCAG3P2-201ENST00000326105 1023 ntBASIC21.91■■□□□ 1.1
MSH6P52701 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSH6P52701 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSH6P52701 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC21.91■■□□□ 1.1
MSH6P52701 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSH6P52701 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSH6P52701 COX5BP1-201ENST00000507622 393 ntBASIC21.91■■□□□ 1.1
MSH6P52701 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC21.91■■□□□ 1.1
MSH6P52701 SDHD-202ENST00000525291 790 ntTSL 3 BASIC21.91■■□□□ 1.1
MSH6P52701 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
MSH6P52701 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSH6P52701 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC21.91■■□□□ 1.1
MSH6P52701 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSH6P52701 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSH6P52701 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
MSH6P52701 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC21.91■■□□□ 1.1
MSH6P52701 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
MSH6P52701 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSH6P52701 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
MSH6P52701 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC21.91■■□□□ 1.1
MSH6P52701 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
MSH6P52701 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC21.91■■□□□ 1.1
MSH6P52701 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC21.91■■□□□ 1.1
MSH6P52701 KRT8P35-201ENST00000483942 1338 ntBASIC21.91■■□□□ 1.1
MSH6P52701 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
MSH6P52701 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
MSH6P52701 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH6P52701 FOS-202ENST00000535987 1402 ntTSL 2 BASIC21.9■■□□□ 1.1
MSH6P52701 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC21.9■■□□□ 1.1
MSH6P52701 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC21.9■■□□□ 1.1
MSH6P52701 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
MSH6P52701 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC21.9■■□□□ 1.1
MSH6P52701 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC21.9■■□□□ 1.1
MSH6P52701 AC134698.3-201ENST00000523880 214 ntBASIC21.9■■□□□ 1.1
MSH6P52701 MIR3907-201ENST00000579424 151 ntBASIC21.9■■□□□ 1.1
MSH6P52701 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
MSH6P52701 DIO1-215ENST00000610607 796 ntTSL 5 BASIC21.9■■□□□ 1.1
MSH6P52701 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
MSH6P52701 AP003419.4-201ENST00000616071 517 ntBASIC21.9■■□□□ 1.1
MSH6P52701 AC079336.7-201ENST00000623428 1078 ntBASIC21.9■■□□□ 1.1
MSH6P52701 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
MSH6P52701 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC21.9■■□□□ 1.1
MSH6P52701 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
MSH6P52701 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC21.9■■□□□ 1.1
MSH6P52701 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC21.9■■□□□ 1.1
MSH6P52701 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH6P52701 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH6P52701 CEP83-AS1-201ENST00000623122 2482 ntBASIC21.9■■□□□ 1.1
MSH6P52701 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
MSH6P52701 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH6P52701 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC21.9■■□□□ 1.1
MSH6P52701 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH6P52701 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
MSH6P52701 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
MSH6P52701 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC21.89■■□□□ 1.1
MSH6P52701 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
MSH6P52701 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC21.89■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms