Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
HOXA1P49639 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HOXA1P49639 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HOXA1P49639 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HOXA1P49639 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HOXA1P49639 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC13.46□□□□□ -0.25
HOXA1P49639 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC13.46□□□□□ -0.25
HOXA1P49639 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
HOXA1P49639 IGHV3-47-201ENST00000425060 335 ntBASIC13.46□□□□□ -0.25
HOXA1P49639 FAM86EP-206ENST00000510506 987 ntBASIC13.46□□□□□ -0.25
HOXA1P49639 AL049597.2-201ENST00000565575 961 ntBASIC13.46□□□□□ -0.25
HOXA1P49639 ARL16-209ENST00000573715 763 ntTSL 3 BASIC13.46□□□□□ -0.25
HOXA1P49639 ARL16-211ENST00000576135 694 ntTSL 3 BASIC13.46□□□□□ -0.25
HOXA1P49639 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HOXA1P49639 TERC-201ENST00000602385 541 ntBASIC13.46□□□□□ -0.25
HOXA1P49639 AC099336.1-202ENST00000602961 463 ntBASIC13.46□□□□□ -0.25
HOXA1P49639 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC13.46□□□□□ -0.25
HOXA1P49639 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HOXA1P49639 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
HOXA1P49639 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC13.46□□□□□ -0.25
HOXA1P49639 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HOXA1P49639 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC13.46□□□□□ -0.25
HOXA1P49639 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
HOXA1P49639 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
HOXA1P49639 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
HOXA1P49639 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
HOXA1P49639 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
HOXA1P49639 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
HOXA1P49639 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
HOXA1P49639 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
HOXA1P49639 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
HOXA1P49639 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC13.46□□□□□ -0.26
HOXA1P49639 BLK-205ENST00000529894 2017 ntTSL 5 BASIC13.46□□□□□ -0.26
HOXA1P49639 IER3-202ENST00000376377 1350 ntBASIC13.45□□□□□ -0.26
HOXA1P49639 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HOXA1P49639 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC13.45□□□□□ -0.26
HOXA1P49639 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC13.45□□□□□ -0.26
HOXA1P49639 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
HOXA1P49639 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HOXA1P49639 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC13.45□□□□□ -0.26
HOXA1P49639 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
HOXA1P49639 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HOXA1P49639 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
HOXA1P49639 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC13.45□□□□□ -0.26
HOXA1P49639 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
HOXA1P49639 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HOXA1P49639 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HOXA1P49639 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
HOXA1P49639 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HOXA1P49639 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
HOXA1P49639 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HOXA1P49639 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC13.45□□□□□ -0.26
HOXA1P49639 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
HOXA1P49639 AP002383.4-201ENST00000442518 975 ntBASIC13.45□□□□□ -0.26
HOXA1P49639 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
HOXA1P49639 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC13.45□□□□□ -0.26
HOXA1P49639 AC087388.1-201ENST00000571370 1112 ntBASIC13.45□□□□□ -0.26
HOXA1P49639 CYB561-217ENST00000582997 877 ntTSL 5 BASIC13.45□□□□□ -0.26
HOXA1P49639 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC13.45□□□□□ -0.26
HOXA1P49639 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC13.45□□□□□ -0.26
HOXA1P49639 AC092329.2-201ENST00000598402 547 ntBASIC13.45□□□□□ -0.26
HOXA1P49639 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC13.45□□□□□ -0.26
HOXA1P49639 AC073592.4-201ENST00000623827 446 ntBASIC13.45□□□□□ -0.26
HOXA1P49639 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC13.45□□□□□ -0.26
HOXA1P49639 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
HOXA1P49639 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC13.45□□□□□ -0.26
HOXA1P49639 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
HOXA1P49639 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC13.45□□□□□ -0.26
HOXA1P49639 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
HOXA1P49639 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
HOXA1P49639 AC073869.1-201ENST00000415574 2762 ntBASIC13.45□□□□□ -0.26
HOXA1P49639 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HOXA1P49639 NCF1C-201ENST00000438382 1427 ntBASIC13.45□□□□□ -0.26
HOXA1P49639 PPT1-215ENST00000641471 2368 ntBASIC13.45□□□□□ -0.26
HOXA1P49639 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
HOXA1P49639 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC13.45□□□□□ -0.26
HOXA1P49639 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
HOXA1P49639 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HOXA1P49639 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HOXA1P49639 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC13.45□□□□□ -0.26
HOXA1P49639 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
HOXA1P49639 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
HOXA1P49639 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 OR2I1P-210ENST00000642037 4691 ntBASIC13.44□□□□□ -0.26
HOXA1P49639 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 GGT3P-204ENST00000453783 1664 ntBASIC13.44□□□□□ -0.26
HOXA1P49639 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC13.44□□□□□ -0.26
HOXA1P49639 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC13.44□□□□□ -0.26
HOXA1P49639 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC13.44□□□□□ -0.26
HOXA1P49639 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC13.44□□□□□ -0.26
HOXA1P49639 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms